Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21300 751 / 0 ATP binding microtubule motor family protein (.1.2) AT4G38950 701 / 0 ATP binding microtubule motor family protein (.1.2) AT3G51150 606 / 0 ATP binding microtubule motor family protein (.1.2) AT5G66310 601 / 0 ATP binding microtubule motor family protein (.1) AT4G24170 543 / 3e-177 ATP binding microtubule motor family protein (.1) AT1G18370 464 / 1e-147 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 462 / 2e-147 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G42490 373 / 2e-112 ATP binding microtubule motor family protein (.1) AT3G12020 279 / 3e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 282 / 5e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G162800 [exp] 1740 / 0 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 910 / 0 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 858 / 0 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.002G027600 [exp] 825 / 0 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 489 / 3e-157 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 463 / 2e-147 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 456 / 2e-144 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.002G081300 [exp] 282 / 2e-79 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G040700 [exp] 278 / 7e-78 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031086 [exp] 1176 / 0 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 1169 / 0 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 600 / 0 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025969 [exp] 597 / 0 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 581 / 0 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 578 / 0 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 566 / 0 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10005181 [exp] 469 / 7e-150 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10032452 [exp] 462 / 5e-147 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 462 / 1e-142 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0023 [poplar] [flax] PF11995 [poplar] [flax] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Potri.009G124500.2 pacid=42771890 polypeptide=Potri.009G124500.2.p locus=Potri.009G124500 ID=Potri.009G124500.2.v4.1 annot-version=v4.1 ATGGGATCAATTGGTAAGGAAGAACTGCTGAAGATGGAGAAGATGCAAATGGCGAGTGCCCGCGAGGAGAAGATTCTTGTTTTGGTGAGGCTAAGGCCTT TGAGCGACAAGGAGATTGTGGAAAATGAAGTAGCAGATTGGGAATGCATCAATGACACCACCATCTTGTACCGGAATACCCTCCGTGAAGGCTCCACGTT TCCATCAGCTTATACTTTTGACAGAGTATTTCGAGGTGACAATGCTACAAGGGAAGTGTACGAGGAAGGAGCCAAGGAAGCTGCCCTTTCAGTTGTCAGC GGTATTAACTCAAGTATCTTTGCTTATGGGCAAACGAGCAGTGGAAAAACATACACCATGATGGGAATAACTGAGTATACAGTGGCAGATATATTTGACT ATATACATAGGCATGAAGAAAGAGCATTTGTTTTGAAGTTCTCAGCAATTGAGATATACAATGAAGCTATCCGAGATCTTCTTAGCACGGACAGCACTCC ACTTCGACTGCTGGATGATCCAGAGAAAGGGACTGTAGTTGAGAAAGCCACCGAGGAAACACTAAAGGACTGGGACCATCTAAAGGAGCTTCTTTCTGTT TGTGAAGCTCAAAGACGGATAGGGGAGACCTCCTTGAATGAGAAAAGCTCCAGATCCCATCAAATTCTTAGACTAACAGTTGAAAGTTCTGCTTGTGAAT TCTTGGGCAAGGAAAATTCGACCACTCTTTCTGCCACTTTGAATTTTGTTGATTTGGCAGGAAGTGAGCGCGCATCTCAGGCACTATCCACTGGAGCAAG ATTAAAAGAAGGTTCCCACATTAACCGAAGTTTACTGACTTTGGGAACCGTTATTCGCAAGCTAAGTAATAGGAGGCAGGGACACATCAATTACAGAGAT TCTAAGCTGACACGGTTACTGCAGCCTGCATTGGGTGGCAATGCTAGAACTGCCATCATCTGCACATTGAGCCCTGCAAGAAGCCATGTTGAGCAAACTA GAAATACTCTTTTGTTTGCTTGTTGTGCAAAAGAAGTTGCTACAAAAGCACAGGTCAATGTAGTCATGTCTGATAAGGCATTGGTTAAGCATTTGCAAAA GGAGGTGGCTAGGTTGGAGAGTGAGTTGAGAAGTCCTGACCTTGCTTCCTCAACTTGTGATTACACATCTCTACTGAGACAGAAAGATCTTCAAATTCAA AAGATGGAGAAGGAGATTAGAGAGTTGACTAAGCAAAGGGATCTTGCTCAATCTCGAGTAGAGGATTTGCTGCGAGTGATTGGAAATGATCAAAATTCAA GAAAGGAGGTATTTTTACTAACTAACCTGGAAGTGCCACTACATGTTGATGATATCACTCCAATTGTAATTGTTAAATATTTCTTCATGCTCTTAATTCA GAATGGGATCAGTCATTGTCATAATACGCAAGCAGGGGATACTTGGGAAGATGAATGTTCAGTATCCAAATCATCAGGCATGGGTGATCCTCATTATCTG AATGGAGGTGCTGGAAAGTTTGGCCCTGCTTGTTATGGTGGAGACAGTGGGAGCAATGATGAGGAACCCTACTGTCTTCTTGACAAAACCGACAGACATG GTTTATCTGATGATACTTCTCCTCCAATGTCAATTGGAAAGAAGATTGTCAGATACAATTCATCTCAGAGTCTAGAGGATGCTGCAGAAGATGCTGATGA CTACTGCAAGGAAGTCCAGTGTATTGAAATGGAAGAGACAAGGAACGGGAGCAATTTCAGACACCATTCAGTATCAAATGGTGAGAATGAAGGAACTTTG GCTTTGACAGCATTCAGGGACGGAGCCACAGCAGTTACCGGAATATCCACTCCAGTTAATAGAGATAGAGAAGGGAGTCACGTGCAAAATGGATATAATG TGTTGGAGCAGAGATTGCATCATGTGCAAAGGACCATTGATGCTCTGGTCAGTCCTTACCCTGATGAATCATCTCCACAGTCCTCAGCAGCTGATATGTC TACTTCTAGAAACCTGAACTTAACAAGGAGCAGGAGTTGTAGAGAGAATTTCATGAATGACCCTTCTCCTGGATTTGAGAAGGCAGAACAAATTGATGGC ACACCACCTAATGGATCTGGGAAAAAATTTACCGGGAGACCAGCAGGACCCCGAAGGAAAATTCCTCCACTTGATTTTGGTGCCAATGCTACAATATTGT CAAGAAATGACTCCCAGTCATCTCTTGGAAGTGCTTGCACAGATGACTTCAGAGCACGGAGCATTGGAACTTGTGCAGATGAGGAGATTCCTAGCATCCA CACTTTTGTTGCAGGAATGAGGGAGATGGCCCAGGAGGAGTATGAGAAGCAACTTGTTGATGGTCAGGTTCAGGAGACAGAGGCATCGACAATGGCTGAT AAATATGAAAAGAGTTCAAGAGACATAGGATTGGATCCTATGCATGAATCTTTGAAAACTTCTCCCAATTGGCCTCTTGAATTTGAGAGACAGCAGAGAG CAATGGTGGAACTCTGGCAAACTTGCAATGTGTCATTGGTCCACAGAACCTACTTTTTCTTGCTCTTTCAAGGCGATCCAACAGATTCCATATACATGGA AGTGGAGCATAGGAGACTTTCCTTCCTCAAGGAAACATTTTCTCAGGGAAATCAGGGTGTGGGAGGTGGTCGGGCTCTCACACTAGCTTCAAGCATCAAG GCTCTTCATCGTGAGAGAGGGATGCTAAGCAAGCTGATGAACAAGAGGTTTTCAGTAGAAGAGAGAAACAGACTTTACAAGAAGTGGGGTATTGCGCTGA ACTCAAAGCGTAGAAGGTTGCAGTTGGCAAACCGCGTGTGGAGCAACACAAAGGACATTAACCATGTCACGGAAAGTGCTGCCGTTGTCGCAAAGCTGGT CGGATTTGTGGAACAGGGACAAGCTCTCAAGGAGATGTTCGGGCTTAGTTTTACTCCCCCGACCTCAAGCACAAAGCGAAGGTCCTTGGGATGGAAATAC AGCAAGTCATCCCTTTTGTAG
AA sequence Show only first row Show all	>Potri.009G124500.2 pacid=42771890 polypeptide=Potri.009G124500.2.p locus=Potri.009G124500 ID=Potri.009G124500.2.v4.1 annot-version=v4.1 MGSIGKEELLKMEKMQMASAREEKILVLVRLRPLSDKEIVENEVADWECINDTTILYRNTLREGSTFPSAYTFDRVFRGDNATREVYEEGAKEAALSVVS GINSSIFAYGQTSSGKTYTMMGITEYTVADIFDYIHRHEERAFVLKFSAIEIYNEAIRDLLSTDSTPLRLLDDPEKGTVVEKATEETLKDWDHLKELLSV CEAQRRIGETSLNEKSSRSHQILRLTVESSACEFLGKENSTTLSATLNFVDLAGSERASQALSTGARLKEGSHINRSLLTLGTVIRKLSNRRQGHINYRD SKLTRLLQPALGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVATKAQVNVVMSDKALVKHLQKEVARLESELRSPDLASSTCDYTSLLRQKDLQIQ KMEKEIRELTKQRDLAQSRVEDLLRVIGNDQNSRKEVFLLTNLEVPLHVDDITPIVIVKYFFMLLIQNGISHCHNTQAGDTWEDECSVSKSSGMGDPHYL NGGAGKFGPACYGGDSGSNDEEPYCLLDKTDRHGLSDDTSPPMSIGKKIVRYNSSQSLEDAAEDADDYCKEVQCIEMEETRNGSNFRHHSVSNGENEGTL ALTAFRDGATAVTGISTPVNRDREGSHVQNGYNVLEQRLHHVQRTIDALVSPYPDESSPQSSAADMSTSRNLNLTRSRSCRENFMNDPSPGFEKAEQIDG TPPNGSGKKFTGRPAGPRRKIPPLDFGANATILSRNDSQSSLGSACTDDFRARSIGTCADEEIPSIHTFVAGMREMAQEEYEKQLVDGQVQETEASTMAD KYEKSSRDIGLDPMHESLKTSPNWPLEFERQQRAMVELWQTCNVSLVHRTYFFLLFQGDPTDSIYMEVEHRRLSFLKETFSQGNQGVGGGRALTLASSIK ALHRERGMLSKLMNKRFSVEERNRLYKKWGIALNSKRRRLQLANRVWSNTKDINHVTESAAVVAKLVGFVEQGQALKEMFGLSFTPPTSSTKRRSLGWKY SKSSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21300			ATP binding microtubule motor ...		Potri.009G124500 [exp]	0	1
AT1G72180			Leucine-rich receptor-like pro...		Potri.019G078400 [exp]	2.44	0.7408
AT2G27950			Ring/U-Box superfamily protein...		Potri.004G217700 [exp]	6.70	0.6961
AT5G24600			Protein of unknown function, D...		Potri.015G001500 [exp]	11.53	0.7057
AT5G17680			disease resistance protein (TI...		Potri.013G097300 [exp]	14.14	0.7008
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	15.06	0.7593
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.017G094500 [exp]	20.49	0.6977
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	21.21	0.7172
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.014G094200 [exp]	21.90	0.7281
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.006G101400 [exp]	23.23	0.6935
AT5G35180			Protein of unknown function (D...		Potri.018G113100 [exp]	23.91	0.6678

Compare expression of checked genes

Potri.009G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.