Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21280 545 / 0 GC1, ATSULA GIANT CHLOROPLAST 1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 60 / 5e-10 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09480 43 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 42 / 0.0003 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G68540 41 / 0.0007 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127500 [exp] 51 / 6e-07 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G033600 [exp] 47 / 9e-06 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.010G125400 [exp] 47 / 2e-05 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G127400 [exp] 45 / 3e-05 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.005G229500 [exp] 44 / 0.0001 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018055 [exp] 558 / 0 AT2G21280 536 / 0.0 GIANT CHLOROPLAST 1, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042051 [exp] 555 / 0 AT2G21280 535 / 0.0 GIANT CHLOROPLAST 1, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021740 [exp] 52 / 4e-07 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10041031 [exp] 50 / 1e-06 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10041863 [exp] 42 / 0.0005 AT4G33360 416 / 3e-146 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family CL0063 [poplar] [flax] PF08338 [poplar] [flax] DUF1731 Domain of unknown function (DUF1731)
Representative CDS sequence Show only first row Show all	>Potri.009G124800.1 pacid=42772429 polypeptide=Potri.009G124800.1.p locus=Potri.009G124800 ID=Potri.009G124800.1.v4.1 annot-version=v4.1 ATGGAGTCGGTGTCAAATAGAGTAACTACTACTTTAACATGGAGCAACTCTATCTCTACTTCTTCACTCCAAATTCCTCAAGTCTTTTCAATTCGTTGTA CTAAGAGATTGAGGGTGTGCTGTGCCTCTGACCAAACCCAGAAGATGACTGTATCAGTAACTGGAGCTACTGGATTTATTGGTAAAAGATTGGTGCAAAG ACTGCACGCAGATAAACATTCTGTTCGTGTATTGACGCGTTCAAGATCGAAAGCTCAGTTAATATTTCCGGTCAAGGAATTTCCTGGGATTCTGATTGCG GAGGAGCGAGATTGGAAAGACTGCATTCAAGGTTCAAATGCTGTTGTAAATTTGGCTGGACTGCCCATTAGTACAAGATGGTCACCTGAGGTCAAGAAAG AGATCAAGCAAAGCAGGATCAAAGTGACCTCAAAGGTTGTAGATTTAATAAATGGTTCACCAGAAGGAGTTCGGCCTGCTGTCCTGGTTAGCGCAACTGC TGTTGGTTACTATGGCAGCAGTGAAACACAAGTTTTTGACGAGCGCAGTCCATCGGGAAATGACTACTTGGCTGAGGTATGTAGAGAATGGGAAGCAACA GCCCTCAAAGTAAACAAAGATGTAAGATTAGCTCTTATCCGCATTGGTGTTGTCCTTGGCAAAGATGGTGGTGCTTTAGCTAAAATGATCCCTCTCTTCA TGCTGTTTGCCGGTGGACCTATGGGCTCTGGACAGCAATGGTTTTCCTGGATTCACTTGGATGATATTGTGAACCTAATTTACGAAGCTTTAACAAATCC ATCTTATAAAGGAGTCATTAATGGAACTGCTCCAAATCCTGTTCGATTGGCTGAGATGTGTGAACAATTGGGAAATGTTATGGGCCGGCCGTCGTGGCTT CCTGTACCTGACTTTGCCCTCAAAGCAGTCCTTGGAGAAGGTGCTTCAGTGGTGCTGGATGGTCAAAGGGTGCTTCCTACTAGAGCCAAGGAGTTAGGTT TCCAGTTTAAATATCCCCAAGTGAAAGATGCTCTTAAAACCATTCTTTCATGA
AA sequence Show only first row Show all	>Potri.009G124800.1 pacid=42772429 polypeptide=Potri.009G124800.1.p locus=Potri.009G124800 ID=Potri.009G124800.1.v4.1 annot-version=v4.1 MESVSNRVTTTLTWSNSISTSSLQIPQVFSIRCTKRLRVCCASDQTQKMTVSVTGATGFIGKRLVQRLHADKHSVRVLTRSRSKAQLIFPVKEFPGILIA EERDWKDCIQGSNAVVNLAGLPISTRWSPEVKKEIKQSRIKVTSKVVDLINGSPEGVRPAVLVSATAVGYYGSSETQVFDERSPSGNDYLAEVCREWEAT ALKVNKDVRLALIRIGVVLGKDGGALAKMIPLFMLFAGGPMGSGQQWFSWIHLDDIVNLIYEALTNPSYKGVINGTAPNPVRLAEMCEQLGNVMGRPSWL PVPDFALKAVLGEGASVVLDGQRVLPTRAKELGFQFKYPQVKDALKTILS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	0	1	GC1.1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G036000 [exp]	1.00	0.9789
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	2.44	0.9783	Pt-ALDH11.1
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.014G029700 [exp]	3.00	0.9761	2,Pt-LHCA5.2
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.002G007100 [exp]	4.47	0.9742
AT3G03620			MATE efflux family protein (.1...		Potri.013G069250 [exp]	5.29	0.9691
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.006G067800 [exp]	6.32	0.9679
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	8.71	0.9439
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	9.38	0.9654
AT1G72030			Acyl-CoA N-acyltransferases (N...		Potri.005G054600 [exp]	9.79	0.9578
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.008G159400 [exp]	10.00	0.9658	Pt-APG1.1

Compare expression of checked genes

Potri.009G124800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.