Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21270 485 / 3e-174 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G38930 449 / 5e-160 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G29070 384 / 2e-134 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G15420 109 / 2e-26 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163200 [exp] 582 / 0 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 397 / 2e-139 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.014G156300 [exp] 109 / 2e-26 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018057 [exp] 517 / 0 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 448 / 6e-159 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 334 / 5e-114 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 253 / 5e-83 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 186 / 2e-55 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10031538 [exp] 114 / 2e-28 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 112 / 1e-27 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [poplar] [flax] Cdc48_2-like PF03152 [poplar] [flax] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Potri.009G124900.6 pacid=42772165 polypeptide=Potri.009G124900.6.p locus=Potri.009G124900 ID=Potri.009G124900.6.v4.1 annot-version=v4.1 ATGCAGTTTTTCGATGGATATGGATACCACGGGACATCGTTTGAGCAGACATATCGATGTTACCCTGCTTCATTTATTGAAAAGCCACAAATTGAGAGTG GTGATAAAATTATAATGCCTCCCTCAGCTCTTGACCGTCTTGCATCCCTGCATATCGATTATCCAATGTTGTTTGAGCTTCAGAATGATGCTGCTGAGCG GGTTTCTCACTGTGGAGTTCTGGAGTTTATTGCAGAGGAAGGCATGATTTATATGCCATACTGGATGATGGAGAACCTGCTTCTACAAGAGGGAGATACA GTGCGAGTGAAAAATGTTACTCTTCCAAAGGGAAAATATGTTAAATTGCAGCCTCACACAAAGGACTTTTTGGATATATCCAACCCAAAAGCTATCTTAG AGACAACATTAAGGAATTATTCCTGCTTAACCACCGGGGATAGTATTATGGTGGCCTATAACAACAAGAAATACTACATAGATATCATAGAAACAAAACC TTCAAATGCAATAAGTATCATTGAGACAGACTGTGAAGTGGACTTTGCACCTCCCCTAGATTACAAGGAGCCTGAAAAGCCTGTTGCATCTGTTCCACCA AGCAAGGCAACCTCCCAAGCTGAAGAGGTTCCAGCTGAGACCGAACCAAAATTTAATCCCTTTACAGGAGCAGGAAGACGCTTGGATGGGAAACCTTTGA GCTATCAGCCCCCACCAGCATCGTCTTCATCAGTGTCTAAAGACAAGCAACCTGCTGTCGCCGATGGCAGTAGGCAGCCATCTCTGGGGTCTAGCTCACA AAATACTGCACGCAAGTCTCAGGGAAAGCTTGTGTTCGGGTCCAATACAGGTCGCACTCCTAAGGAAACACAGAGGGAGGAATCTGGAAAAGAGACCAAG CAAGAGCAGCCTGAAAAGAAAGAAGAGCCAAAATTCCAGGCATTCACTGGGAAGAAGTACTCATTGAAAGGTTGA
AA sequence Show only first row Show all	>Potri.009G124900.6 pacid=42772165 polypeptide=Potri.009G124900.6.p locus=Potri.009G124900 ID=Potri.009G124900.6.v4.1 annot-version=v4.1 MQFFDGYGYHGTSFEQTYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELQNDAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDT VRVKNVTLPKGKYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPVASVPP SKATSQAEEVPAETEPKFNPFTGAGRRLDGKPLSYQPPPASSSSVSKDKQPAVADGSRQPSLGSSSQNTARKSQGKLVFGSNTGRTPKETQREESGKETK QEQPEKKEEPKFQAFTGKKYSLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.009G124900 [exp]	0	1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.014G157200 [exp]	3.46	0.8142
AT1G48900			Signal recognition particle, S...		Potri.001G253500 [exp]	4.47	0.8039	SRP.4
AT5G60570			Galactose oxidase/kelch repeat...		Potri.019G042100 [exp]	5.29	0.8283
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.003G166500 [exp]	5.91	0.7999
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	7.41	0.8484	Pt-FIP1.3
AT1G78420			RING/U-box superfamily protein...		Potri.001G378000 [exp]	10.48	0.7845
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	10.95	0.7844
AT1G16840			unknown protein		Potri.010G252800 [exp]	16.43	0.7612
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	21.33	0.7840
AT1G53190			RING/U-box superfamily protein...		Potri.011G097100 [exp]	24.33	0.7751

Compare expression of checked genes

Potri.009G124900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.