Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AVAP5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34720 226 / 4e-76 ATVHA-C1, AVA-P1 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) AT4G38920 226 / 4e-76 AVA-P3, ATVHA-C3 vacuolar-type H\(+\)-ATPase C3, vacuolar-type H\(+\)-ATPase C3, vacuolar-type H(+)-ATPase C3 (.1) AT2G16510 226 / 4e-76 AVA-P1 ATPase, F0/V0 complex, subunit C protein (.1) AT1G19910 224 / 2e-75 AVA-2PE, ATVHA-C2, AVA-P2 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) AT1G75630 221 / 3e-74 AVA-P4, AVA-P vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4, vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.1), vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.2) AT2G25610 54 / 4e-09 ATPase, F0/V0 complex, subunit C protein (.1) AT4G32530 54 / 4e-09 ATPase, F0/V0 complex, subunit C protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163400 [exp] 226 / 4e-76 AT4G34720 224 / 4e-76 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) Potri.007G014600 [exp] 224 / 2e-75 AT1G19910 224 / 5e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.005G235300 [exp] 224 / 2e-75 AT1G19910 225 / 2e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.002G027200 [exp] 224 / 2e-75 AT1G19910 226 / 9e-77 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.002G082700 [exp] 224 / 2e-75 AT1G19910 221 / 9e-75 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.006G248700 [exp] 54 / 6e-09 AT4G32530 281 / 3e-98 ATPase, F0/V0 complex, subunit C protein (.1.2) Potri.018G032600 [exp] 53 / 1e-08 AT2G25610 249 / 8e-86 ATPase, F0/V0 complex, subunit C protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010623 [exp] 223 / 1e-74 AT1G19910 315 / 6e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10033179 [exp] 222 / 1e-74 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10028367 [exp] 222 / 1e-74 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10028370 [exp] 222 / 1e-74 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10041819 [exp] 222 / 1e-74 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010618 [exp] 222 / 1e-74 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010619 [exp] 221 / 4e-74 AT1G19910 315 / 5e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10000347 [exp] 53 / 1e-08 AT4G32530 312 / 3e-110 ATPase, F0/V0 complex, subunit C protein (.1.2) Lus10000694 [exp] 53 / 1e-08 AT4G32530 312 / 3e-110 ATPase, F0/V0 complex, subunit C protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00137 [poplar] [flax] ATP-synt_C ATP synthase subunit C
Representative CDS sequence Show only first row Show all	>Potri.009G125000.4 pacid=42772399 polypeptide=Potri.009G125000.4.p locus=Potri.009G125000 ID=Potri.009G125000.4.v4.1 annot-version=v4.1 ATGGATGATTGTCTTCCACCCGTTTCTTCTCTAAACAGGGAGAGAGAGCAAAGGAATTCTAATTTCTCAAAAAGCTATCTGCAAACTTCAGATCTAAAAC GACACTGTCTCAGATCCAGTTTATCAATCATGTCTACTTTCAGTGGCGATGAAACTGCACCGTTCTTCGGCTTCCTTGGGGCTGCTGCTGCCCTCGTCTT CTCATGTATGGGAGCAGCTTATGGAACCGCTAAGAGTGGAGTTGGTGTGGCATCGATGGGAGTGATGAGGCCCGAGTTGGTGATGAAGTCGATTGTTCCA GTTGTTATGGCTGGTGTGTTGGGTATTTATGGGTTGATTATTGCTGTTATTATTAGTACCGGAATTAACCCTAAGGCTAAGTCTTATTACCTTTTCGACG GGTATGCACATCTCTCGTCCGGTCTCGCTTGTGGCCTTGCCGGGCTATCTGCTGGAATGGCCATTGGCATTGTTGGTGATGCTGGTGTCAGAGCTAATGC TCAACAGCCTAAACTTTTTGTTGGAATGATTCTTATCCTCATCTTTGCCGAAGCGTTGGCTCTTTATGGCCTTATTGTTGGCATCATCTTGTCTTCCCGT GCTGGCCAGTCCAGGGCAGAATAA
AA sequence Show only first row Show all	>Potri.009G125000.4 pacid=42772399 polypeptide=Potri.009G125000.4.p locus=Potri.009G125000 ID=Potri.009G125000.4.v4.1 annot-version=v4.1 MDDCLPPVSSLNREREQRNSNFSKSYLQTSDLKRHCLRSSLSIMSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVP VVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR AGQSRAE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34720		ATVHA-C1, AVA-P...	VACUOLAR H+-PUMPING ATPASE C1,...		Potri.009G125000 [exp]	0	1	Pt-AVAP5.2
AT3G03070			NADH-ubiquinone oxidoreductase...		Potri.013G082100 [exp]	1.00	0.9084
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.012G033000 [exp]	1.73	0.8858	UBC9.1
AT2G44360			unknown protein		Potri.001G230100 [exp]	2.82	0.8635
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.005G085100 [exp]	3.00	0.8631
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.009G118500 [exp]	3.16	0.8582
AT1G51200			A20/AN1-like zinc finger famil...		Potri.016G051700 [exp]	3.74	0.8473
AT2G21190			ER lumen protein retaining rec...		Potri.009G128900 [exp]	5.47	0.8921
AT5G08530		CI51	51 kDa subunit of complex I (....		Potri.010G057400 [exp]	9.53	0.7906
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.014G086600 [exp]	11.22	0.8095	Pt-UBC4.2
AT4G32390			Nucleotide-sugar transporter f...		Potri.006G252500 [exp]	12.56	0.7949

Compare expression of checked genes

Potri.009G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.