Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34740 883 / 0 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) AT2G16570 877 / 0 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G38880 719 / 0 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1) AT3G24090 49 / 1e-05 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164000 [exp] 1054 / 0 AT4G34740 891 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.019G054500 [exp] 58 / 2e-08 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035459 [exp] 857 / 0 AT4G34740 837 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10042058 [exp] 852 / 0 AT4G34740 826 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018063 [exp] 208 / 1e-64 AT4G34740 195 / 1e-60 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018062 [exp] 206 / 1e-63 AT4G34740 196 / 6e-61 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10020198 [exp] 46 / 7e-05 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain CL0052 [poplar] [flax] NTN PF13537 [poplar] [flax] GATase_7 Glutamine amidotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.009G125600.1 pacid=42771009 polypeptide=Potri.009G125600.1.p locus=Potri.009G125600 ID=Potri.009G125600.1.v4.1 annot-version=v4.1 ATGGCAGCCACCGCCGCCACCACCACTAGTTTCTCTGCTCTTTCAAAGCATTCTCTTTCTTTAAACACTAGCCCTCAAGTTCCCCAGAAGGCCCCTCCTT TTCTCCTCCCCAAAACCCTTCAAAAACCCCACCTTTCTCACGCTACCCACAAAACCCACATCACTCTTTCCTCTAAAAATCCAATCTCTGACCTTGTTTC CACAGACAAAAGGAGCTCGGATGATTTTTCTTCTTATTTTGACGACGACGACGATAAGCCTCGTGAAGAGTGCGGTGTTGTGGGTATCTATGGTGACCCA GAAGCTTCACGTCTTTGCTACTTGGCCCTTCATGCTTTGCAACATAGAGGTCAAGAAGGAGCTGGTATTGTTACTGTTAATGACAATAAGGTTTTGCAAT CTGTTACTGGTGTCGGTTTAGTCTCTGAAGTGTTTAATGAGTCAAAACTTGACCAATTACCCGGTGATTTAGCTATTGGTCATGTTAGATATTCAACTGC TGGGTCTTCGATGCTTAAAAACGTGCAACCTTTTGTTGCCGGTTATAGGTTTGGCTCTGTCGGGGTTGCCCATAATGGGAATTTAGTGAATTATAGGAAA TTAAGGGCTATCCTTGAAGAAAATGGTTCGATTTTTAATACTAGTTCTGATACTGAAGTTGTTTTGCATTTGATTGCCACATCAAAAACTAGACCTTTCT TTTTGAGGATTGTTGATGCTTGCGAGAAGCTTGAAGGAGCTTATTCTATGGTCTTTCTTACCGAGGATAAGTTGGTAGCTGTGAGGGATCCTTATGGTTT TAGGCCTCTGGTGATGGGAAGGAGGAGTAACGGTGCTGTTGTGTTTGCTTCTGAGACATGTGCTCTTGATTTGATTGAGGCCACATATGAGAGAGAGGTT TATCCTGGTGAAGTTTTAGTGGTGGACAAAGACGGGGTTCAATCTCTTTGCCTAATGCCCCACCCTGAACCGAAACAGTGCATATTTGAGCATATTTATT TTTCTTTGCCTAATTCAATAGTATTTGGCAGGTCTGTTTATGAGTCAAGGCATATTTTCGGGGAAATACTTGCTACTGAGGCTCCTGTTGATTGCGATGT AGTGATTGCGGTCCCGGACTCTGGGGTGGTGGCTGCACTTGGTTATGCAGCGAAAGCAGGTGTCCCTTTTCAGCAAGGGTTGATAAGGTCGCATTATGTT GGAAGGACTTTCATTGAGCCATCACAGAAGATTAGGGACTTCGGGGTTAAGCTTAAGCTGTCTCCAGTGAGGAGAGTCTTGGAGGGGAAGAGAGTTGTGG TTGTGGATGATTCGATTGTGAGAGGAACTACCTCATCAAAAATTGTTAGGTTGCTTAAGGAGGCTGGGGCTAAGGAGATCCATATGAGGATTGCTAGTCC ACCAATTATAGCTTCTTGCTACTATGGAGTAGATACACCAAGTTCTGAGGAGTTGATATCTAATAGAATGAGCGTGGAGGAGATTAGGGAGTTCATTGGA TGTGATTCGCTTGCATTTCTACCATTGGATAGCTTGAAAAAATTGTTGGCTGAGGAGTCTCCGAATTTTTGTTATGCTTGCTTCTCTGGGAAGTACCCTG TCCAGCCAAAGGAAGTTATGGTGAAAAGGATCGGTGATTTTGTGGATGATGGATTGAATGGAAGTCCAGAGTCCATTGATGGGGGCTGGGTGCAAGCACC CCTGAATCAGGATGTGCCGAAAGTCAGTGAAGCCGGGAAGTTGTCTTCTTTGACATGA
AA sequence Show only first row Show all	>Potri.009G125600.1 pacid=42771009 polypeptide=Potri.009G125600.1.p locus=Potri.009G125600 ID=Potri.009G125600.1.v4.1 annot-version=v4.1 MAATAATTTSFSALSKHSLSLNTSPQVPQKAPPFLLPKTLQKPHLSHATHKTHITLSSKNPISDLVSTDKRSSDDFSSYFDDDDDKPREECGVVGIYGDP EASRLCYLALHALQHRGQEGAGIVTVNDNKVLQSVTGVGLVSEVFNESKLDQLPGDLAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRK LRAILEENGSIFNTSSDTEVVLHLIATSKTRPFFLRIVDACEKLEGAYSMVFLTEDKLVAVRDPYGFRPLVMGRRSNGAVVFASETCALDLIEATYEREV YPGEVLVVDKDGVQSLCLMPHPEPKQCIFEHIYFSLPNSIVFGRSVYESRHIFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYV GRTFIEPSQKIRDFGVKLKLSPVRRVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEIHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIG CDSLAFLPLDSLKKLLAEESPNFCYACFSGKYPVQPKEVMVKRIGDFVDDGLNGSPESIDGGWVQAPLNQDVPKVSEAGKLSSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	0	1
AT5G19875			unknown protein		Potri.001G231300 [exp]	1.00	0.9849
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.008G142900 [exp]	2.82	0.9806
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.003G085500 [exp]	3.46	0.9775	Pt-BMY.2
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	4.24	0.9786	Pt-SIGE.3
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	5.47	0.9736
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	5.47	0.9774
AT2G17350			unknown protein		Potri.009G169200 [exp]	5.65	0.9441
AT5G22090			Protein of unknown function (D...		Potri.009G016600 [exp]	5.83	0.9428
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	6.48	0.9680
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	6.70	0.9615

Compare expression of checked genes

Potri.009G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.