Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04900 70 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1) AT4G23882 65 / 5e-12 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 60 / 4e-10 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G37860 58 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G30473 55 / 9e-09 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 56 / 1e-08 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT1G23000 55 / 2e-08 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 55 / 2e-08 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G71050 49 / 4e-07 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 50 / 9e-07 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326100 [exp] 103 / 3e-26 AT3G04900 66 / 8e-13 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G144200 [exp] 79 / 7e-17 AT3G04900 58 / 7e-10 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G091700 [exp] 65 / 4e-12 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 59 / 7e-10 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.010G175800 [exp] 58 / 1e-09 AT3G06130 81 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.005G036300 [exp] 58 / 2e-09 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.010G114300 [exp] 56 / 7e-09 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 50 / 2e-07 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114600 [exp] 50 / 2e-07 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041228 [exp] 57 / 4e-09 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032445 [exp] 55 / 2e-08 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 52 / 4e-08 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10032446 [exp] 50 / 3e-07 AT1G71050 175 / 2e-56 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10001892 [exp] 49 / 4e-07 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1) Lus10042946 [exp] 47 / 2e-06 AT1G71050 196 / 3e-65 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10031514 [exp] 49 / 3e-06 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10020704 [exp] 47 / 3e-06 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10009115 [exp] 46 / 6e-06 AT5G17450 206 / 5e-69 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028531 [exp] 46 / 6e-06 AT5G17450 207 / 1e-69 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.009G126600.1 pacid=42771803 polypeptide=Potri.009G126600.1.p locus=Potri.009G126600 ID=Potri.009G126600.1.v4.1 annot-version=v4.1 ATGGCTGTCCCTATTTTCACCGTGAAAGTGCATATCAGTTGCTGTTCAAGATGTACGCAGAGAGCCAAGGAAAAGTTGCAGAAAATCAAAGGGGTGAATT CCATCACCATCGACACAGCAAAAGATTTGGTGATCGTTTCCGGCAGTGTTGAGCCTGCGGTAATTCTAGAGAAGTTCGCTGAGTGGGGAAAAAAGGCAGA ACTTTTTTCCTTTCAAAAAGAACCCATGGAGAGTGGCGGTGGCCACGACAAGGATAAAACTAATTTGAATAAAAATTATTATAGGAAGAGTGATTCGGTT CCCGGCGCAGTACCCGCCAACAGGTTTTTGCATGATAACCCTAACATGTACGTCGCGAGAGACAGCAAGAAGGGTAAATGGTGTTGGCTTGGTAAAATAA TATTCGGAAACAAACCGAGGGCTAGATCTTTGGTTGCAAAAGCTCATGCTGACAATAAGTGGCAGGCTCCAAGGATACCTATGAATGAATTTGGATCATC AAAGCCAATATATGGAAACCAATTAGCTATGCATGAATTTAGATCCTCACAGCCATTTTATGGTAGCCAATTACCTATGGATCAATTTGGATCCTCAAGA CCATTTAATGGAAGCCATTTCAATAGACCATCGATGTATGGAAGACCAAGTCGACAACCGGTGCCTCCACAACCAATGTATATGCCAAGGCCACCATTCT TACCCCCATATGGGGGGATGCAGCCAGGGGCGGCAGCTGCACCGTCGCACTCGGTCAATCCCATGATCCACTACACAAGTTATGACGATAATTATCGTCA TTGGTGA
AA sequence Show only first row Show all	>Potri.009G126600.1 pacid=42771803 polypeptide=Potri.009G126600.1.p locus=Potri.009G126600 ID=Potri.009G126600.1.v4.1 annot-version=v4.1 MAVPIFTVKVHISCCSRCTQRAKEKLQKIKGVNSITIDTAKDLVIVSGSVEPAVILEKFAEWGKKAELFSFQKEPMESGGGHDKDKTNLNKNYYRKSDSV PGAVPANRFLHDNPNMYVARDSKKGKWCWLGKIIFGNKPRARSLVAKAHADNKWQAPRIPMNEFGSSKPIYGNQLAMHEFRSSQPFYGSQLPMDQFGSSR PFNGSHFNRPSMYGRPSRQPVPPQPMYMPRPPFLPPYGGMQPGAAAAPSHSVNPMIHYTSYDDNYRHW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04900			Heavy metal transport/detoxifi...		Potri.009G126600 [exp]	0	1
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.001G150001 [exp]	16.61	0.5499
AT3G07200			RING/U-box superfamily protein...		Potri.001G082200 [exp]	25.09	0.5077
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.010G209800 [exp]	26.00	0.4870
AT4G20310			Peptidase M50 family protein (...		Potri.001G073200 [exp]	34.00	0.4741
AT1G51220	C2H2ZnF	AtWIP5, WIP5	WIP domain protein 5 (.1)		Potri.001G018900 [exp]	48.74	0.4930
					Potri.005G157601 [exp]	93.25	0.4450
					Potri.004G086050 [exp]	115.54	0.3842
AT3G02645			Plant protein of unknown funct...		Potri.017G124100 [exp]	117.58	0.4226
					Potri.001G293700 [exp]	138.23	0.3816
AT4G08850			Leucine-rich repeat receptor-l...		Potri.005G253301 [exp]	153.08	0.3731

Compare expression of checked genes

Potri.009G126600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.