Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2) AT5G28830 74 / 2e-14 calcium-binding EF hand family protein (.1) AT2G44310 49 / 7e-07 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G166900 [exp] 610 / 0 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.005G052900 [exp] 76 / 3e-15 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1) Potri.013G040500 [exp] 74 / 1e-14 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1) Potri.002G218300 [exp] 51 / 9e-08 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 50 / 2e-07 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218201 [exp] 50 / 3e-07 AT2G44310 136 / 4e-42 Calcium-binding EF-hand family protein (.1) Potri.014G161200 [exp] 49 / 4e-07 AT2G44310 143 / 1e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 49 / 5e-07 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 49 / 5e-07 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007567 [exp] 544 / 0 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2) Lus10012178 [exp] 517 / 0 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2) Lus10026291 [exp] 506 / 2e-180 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10042380 [exp] 484 / 2e-172 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2) Lus10015916 [exp] 69 / 9e-13 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1) Lus10009175 [exp] 46 / 3e-05 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G127800.2 pacid=42772058 polypeptide=Potri.009G127800.2.p locus=Potri.009G127800 ID=Potri.009G127800.2.v4.1 annot-version=v4.1 ATGGAGAAGAGTAAGGGTAGCAGTAGCGGTAGCACAAGCACAGAAAAGATAAAGACAAGTGGGGGAAATGGACAGGTTTTAGACGGTTCAGATATAATGG AGTTGGTTGGGAATGAAGAGGTGTTTAGCAGTTTTGTGGATCATAAGTTCCAAGAGCTGGATAGGGATAGAGATGGTAAGCTCTCTTTGAAAGAACTTGA ACCTGCCGTTGCTGATATTGGCGCTGCCCTAGGCTTGCCTGCTCAGGGTTCATCTCCTGATTCTGATCATATCTACACCGAGGTTCTAAATGAATTCACA CATGGCAAGCAAGAGAGAGTGAGCAAGACTGAGTTCAAAGAAGTTCTATCAGATTTTCTTCTAGGCATGGCTTCTGGTTTGAAGCGAGACCCCATAGTGA TCCTCCGTATTGATGGAGAAGACCTCTTAGAGTTCATCAATGGACCAGATTATGAAGCAGAAATGGTGCTCTTGTTTTCACAGTTAGAATCACCTGATGG ATCACTCCATGACCACATTGTCAAAGTTTTGGAACAACTTACAGTAGATCAAGGGATGCCCCCGTCTTCAGATTCTTGGGTAATGAGCAACATTGTGGAA CCAGCTTTACAATCTTGTACTGGTCAAGATCATGACAAGCCGCTTTCTCAAGAGACATTCCTGGCGGAGTTCAGGAAAGTGGCAGAGAGTGTAGCTCAAC ATCTCAAAGAGCAGCCTGTGATTGTTGCACACTGTGAAAACACCTTTGATGGAAGTGGAATTAGGAGACTCTTATCCAACAAATTTGAATTAGACAAGAC ACTAAACACAGCAACGGAGAATGCCCCAAAGGATCGCAATGGGAAAATATCTAACGAGTATTTGCGTGTGGCACTAGATGCGGTCGCTCCGTCAGCTGGC CTGCCTCCAATCGGTGCGATCCAAGAGATGGACGAGGTTATAAGCGAAGTGTTTAAGATGATGAATGCAGATGATGGGAAACTGGTTAAAGAGGATGAGT TTAAGAAGATGTTGACTGAAATCATGGGAAGCATAATGTTGCAGTTAGAGAGCAACCCCGTCTCCATTTCTTCAAATTCTGTTGTCCATGAGCCCCTCGC TTCCTCCACTACACTTTTGCAGCCATCTTCCTAG
AA sequence Show only first row Show all	>Potri.009G127800.2 pacid=42772058 polypeptide=Potri.009G127800.2.p locus=Potri.009G127800 ID=Potri.009G127800.2.v4.1 annot-version=v4.1 MEKSKGSSSGSTSTEKIKTSGGNGQVLDGSDIMELVGNEEVFSSFVDHKFQELDRDRDGKLSLKELEPAVADIGAALGLPAQGSSPDSDHIYTEVLNEFT HGKQERVSKTEFKEVLSDFLLGMASGLKRDPIVILRIDGEDLLEFINGPDYEAEMVLLFSQLESPDGSLHDHIVKVLEQLTVDQGMPPSSDSWVMSNIVE PALQSCTGQDHDKPLSQETFLAEFRKVAESVAQHLKEQPVIVAHCENTFDGSGIRRLLSNKFELDKTLNTATENAPKDRNGKISNEYLRVALDAVAPSAG LPPIGAIQEMDEVISEVFKMMNADDGKLVKEDEFKKMLTEIMGSIMLQLESNPVSISSNSVVHEPLASSTTLLQPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38810			Calcium-binding EF-hand family...		Potri.009G127800 [exp]	0	1
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.002G139800 [exp]	7.48	0.7918
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	19.23	0.7967
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007100 [exp]	39.59	0.7609
AT1G29290			unknown protein		Potri.011G070500 [exp]	43.81	0.7744
AT1G67850			Protein of unknown function (D...		Potri.008G185600 [exp]	44.15	0.7483
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.014G100800 [exp]	44.98	0.7522	MYB201
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.006G109600 [exp]	54.47	0.7469	Pt-ATPK19.1
AT4G19880			Glutathione S-transferase fami...		Potri.015G121600 [exp]	61.26	0.7479
AT1G05280			Protein of unknown function (D...		Potri.017G039600 [exp]	61.76	0.7412
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.006G120600 [exp]	63.99	0.7525	GT4.2

Compare expression of checked genes

Potri.009G127800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.