Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45960 106 / 8e-27 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G01620 104 / 4e-26 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT3G61430 104 / 5e-26 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G00430 102 / 2e-25 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT4G23400 99 / 6e-24 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT2G16850 89 / 1e-20 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT3G53420 85 / 7e-19 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT2G37180 84 / 2e-18 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G37170 84 / 2e-18 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G54820 83 / 3e-18 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167000 [exp] 438 / 4e-156 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128000 [exp] 424 / 2e-150 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128300 [exp] 393 / 8e-139 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128500 [exp] 356 / 1e-123 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128100 [exp] 189 / 4e-59 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.010G191900 [exp] 105 / 2e-26 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 100 / 2e-24 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.008G065600 [exp] 100 / 2e-24 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.003G128600 [exp] 98 / 1e-23 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007568 [exp] 353 / 1e-122 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10042385 [exp] 311 / 1e-106 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10042375 [exp] 157 / 1e-45 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10028273 [exp] 103 / 9e-26 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10035483 [exp] 92 / 4e-21 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10027467 [exp] 91 / 4e-21 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 91 / 4e-21 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10032283 [exp] 90 / 1e-20 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 90 / 1e-20 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014978 [exp] 89 / 3e-20 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.009G127900.2 pacid=42770767 polypeptide=Potri.009G127900.2.p locus=Potri.009G127900 ID=Potri.009G127900.2.v4.1 annot-version=v4.1 ATGGCTGGATATACAGAGGGCGATGAAGAAAACCTCTTTAGGGCTAACAAAATACAACGTTTTGCCACTACACCAACGGCAGAGGTAGTTAAAAACGAGA AGAGGATGAAGAAGCAAAAATCCACTAAATTGAGCGAGATATTGGGATTGGAAGACCTTGTTTCTTTGACGGTATGGAGAGCATCAGTGGCAGAGCTCAT AGGCACAGCTGTTCTTGTTTTTACATTGGACACCATCGTTATTTCAACCATTCGGATCGAGACAAAAATACCAAACCTCATATTATCAATTCTTGCTGCC ATCATTATCACAATTCTCATACTAGCTACCTTTCCCATTTCTGGTGGCCACATTAATCCTCTTGTAACCTTCGCTGCCTTGCTAACTGGCCTTGTTTCTC TGTCAAAAGCTATTATCTATATTTTGGCACAATGTGTTGGTGGCATTTTTGGTGCCCTAGCACTAAAAGCTGTGGTAAACAGAGAAATTCAACAAACCTT TTCACTTGGAGGTTGTACCCTCACCGTTGTTGCTCCAGGGCCAGATGGGCAGACTGTGATCGGCCTAGAGACAAGCCAGGCCCTTTGGCTGGAGATAATT TGTGGGTTTGTGTTTCTTTTTGCTTCAGTGTGGATGGCCTTCGATCAACGCCAAGCGAAGGCTTTAGGCCGAGTTAATGTTTTTATCATCATCGGAATAG TCGTGGGTCTTCTTGTTTACATTTCAACCACTGTCACGGCTACGAAGGGCTATGCTGGGGCTGGGCTGAACCCAGCAAGGTGTTTAGGGCCAGCAATTGT TAGAGGGGGCCATCTTTGGGATGGTCATTGGGTATTCTGGGTTGGGCCTGGTATTGCTTGTGTGTTATTTGCTCTCTACACAAAGCTAATTCCTCCTCAG CTTTCCCACACAATAGAATAG
AA sequence Show only first row Show all	>Potri.009G127900.2 pacid=42770767 polypeptide=Potri.009G127900.2.p locus=Potri.009G127900 ID=Potri.009G127900.2.v4.1 annot-version=v4.1 MAGYTEGDEENLFRANKIQRFATTPTAEVVKNEKRMKKQKSTKLSEILGLEDLVSLTVWRASVAELIGTAVLVFTLDTIVISTIRIETKIPNLILSILAA IIITILILATFPISGGHINPLVTFAALLTGLVSLSKAIIYILAQCVGGIFGALALKAVVNREIQQTFSLGGCTLTVVAPGPDGQTVIGLETSQALWLEII CGFVFLFASVWMAFDQRQAKALGRVNVFIIIGIVVGLLVYISTTVTATKGYAGAGLNPARCLGPAIVRGGHLWDGHWVFWVGPGIACVLFALYTKLIPPQ LSHTIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Potri.009G127900 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G064800 [exp]	1.73	0.9151
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.004G015600 [exp]	2.00	0.9231	Pt-LCOSC2.7
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	4.00	0.9144
AT1G79160			unknown protein		Potri.001G446800 [exp]	5.65	0.8114
					Potri.008G103700 [exp]	5.91	0.9071
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.001G027232 [exp]	6.32	0.8930
					Potri.001G399050 [exp]	8.12	0.9109
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	8.71	0.7945
AT4G23170		CRK9, EP1	CYSTEINE-RICH RLK \(RECEPTOR-L...		Potri.007G120800 [exp]	8.83	0.8659
					Potri.010G147200 [exp]	8.94	0.8830

Compare expression of checked genes

Potri.009G127900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.