Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23400 99 / 3e-24 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT3G61430 95 / 2e-22 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G00430 94 / 3e-22 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 94 / 5e-22 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G01620 93 / 8e-22 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT2G16850 92 / 2e-21 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT3G53420 85 / 6e-19 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT4G35100 85 / 7e-19 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G37170 84 / 2e-18 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT1G17810 82 / 6e-18 BETA-TIP beta-tonoplast intrinsic protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128300 [exp] 454 / 1e-162 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.004G167000 [exp] 447 / 8e-160 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G127900 [exp] 414 / 1e-146 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.009G128500 [exp] 363 / 2e-126 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128100 [exp] 182 / 3e-56 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.003G128600 [exp] 95 / 1e-22 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 95 / 2e-22 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.004G176300 [exp] 91 / 3e-21 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.008G065600 [exp] 89 / 2e-20 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007568 [exp] 347 / 1e-119 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10042385 [exp] 311 / 1e-106 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10042375 [exp] 145 / 4e-41 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10039222 [exp] 91 / 4e-21 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 91 / 5e-21 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10014978 [exp] 90 / 9e-21 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10028273 [exp] 88 / 6e-20 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10023184 [exp] 85 / 1e-18 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014840 [exp] 84 / 3e-18 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10026295 [exp] 80 / 8e-18 AT3G61430 66 / 2e-13 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.009G128000.3 pacid=42771244 polypeptide=Potri.009G128000.3.p locus=Potri.009G128000 ID=Potri.009G128000.3.v4.1 annot-version=v4.1 ATGGCTGGATTTGCAGGGCCTATTCCGGACGAAGAAAGCCTCAACAGTGGAAATAGAATCCAACCTTTTGCCACCACGCCAATGGCAGAGGCACTTAAGA ACGAGGGAGGGAAGACTAAGCAAATTACATGGAGAGAAATATTGGGCTTAGAAGACCTTCTCTCTTTGACGGTATGGAGAGCATCAGTAGCAGAGCTATT GGGAACAGCTGTTCTTGTTTTTGCTTTGGACACCATAGTGATTTCCACGATTCAGACAGGGACAAACATGCCCAACCTTATACTGTCAACCCTTGTTGCC ATCATTATCACAATTCTCCTACTAGCTACCTTTCCCATTTCTGGTGGCCACATCAATCCTATTATCACCTTCGCTGCCTTCTTAACTGGCCTTATTTCCC TTTCAAAAACTTTTATCTACATATTGGCCCAGTGCGTTGGTGCCATTTTTGGTGCTCTGGCACTGAAAGCTGTGGTAAACAGCGAAATTGAAAAAACATA TTCACTCGGAGGCTGTACCCTCACAATTGTTGCACCAGGGCCACATGGGCCGACTGTGATAGGCTTGGAGACAAGCCAGGCCCTTTGGCTGGAGATAATT TGTGGGTTTGTGTTTCTTTTTGCCTCAGTGTGGATGGCCTTCGATCATCGTCAAGCCAAGGGCATAGGCCGAGTTAGTGTTTTGATCATCGTGGGAATAG TCTTAGGCCTTCTCGTGTTTGTTTCCACCACAGTCACTGCTACGAAAGGTTATGCAGGGGCAGGGCTGAACCCAGCTAGGTGTTTGGGTCCGGCGATTGT AAGAGGAGGTCATCTTTGGAATGGGCATTGGGTATTTTGGGTTGGACCAGCTATTGCATGCGTGGCCTTCGCCGTGTACACGAAGATCATTCCACGCCAA CTTGCCCACACCATAGAATAA
AA sequence Show only first row Show all	>Potri.009G128000.3 pacid=42771244 polypeptide=Potri.009G128000.3.p locus=Potri.009G128000 ID=Potri.009G128000.3.v4.1 annot-version=v4.1 MAGFAGPIPDEESLNSGNRIQPFATTPMAEALKNEGGKTKQITWREILGLEDLLSLTVWRASVAELLGTAVLVFALDTIVISTIQTGTNMPNLILSTLVA IIITILLLATFPISGGHINPIITFAAFLTGLISLSKTFIYILAQCVGAIFGALALKAVVNSEIEKTYSLGGCTLTIVAPGPHGPTVIGLETSQALWLEII CGFVFLFASVWMAFDHRQAKGIGRVSVLIIVGIVLGLLVFVSTTVTATKGYAGAGLNPARCLGPAIVRGGHLWNGHWVFWVGPAIACVAFAVYTKIIPRQ LAHTIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23400		PIP1D, PIP1;5	plasma membrane intrinsic prot...		Potri.009G128000 [exp]	0	1
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G128300 [exp]	1.00	0.8670
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.002G201900 [exp]	4.58	0.8330
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.019G090800 [exp]	11.31	0.8374	CLE4.1
AT1G71140			MATE efflux family protein (.1...		Potri.004G094900 [exp]	21.90	0.8296
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134000 [exp]	25.03	0.7669
AT1G17030			unknown protein		Potri.001G381400 [exp]	25.09	0.8118
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G170100 [exp]	25.45	0.8148
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	27.71	0.8326
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Potri.008G072000 [exp]	29.83	0.8077
AT2G04100			MATE efflux family protein (.1...		Potri.004G094800 [exp]	31.46	0.8084

Compare expression of checked genes

Potri.009G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.