Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73190 91 / 9e-22 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 86 / 8e-20 BETA-TIP beta-tonoplast intrinsic protein (.1) AT4G01470 84 / 3e-19 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT2G36830 79 / 2e-17 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT3G54820 79 / 2e-17 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT3G61430 77 / 2e-16 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT5G47450 76 / 3e-16 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT2G37170 76 / 4e-16 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT4G35100 76 / 6e-16 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G45960 76 / 7e-16 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167000 [exp] 201 / 2e-63 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128000 [exp] 197 / 3e-62 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128500 [exp] 197 / 3e-62 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.009G127900 [exp] 195 / 2e-61 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.009G128300 [exp] 192 / 2e-60 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.017G154800 [exp] 89 / 5e-21 AT1G17810 372 / 1e-131 beta-tonoplast intrinsic protein (.1) Potri.018G152100 [exp] 86 / 9e-20 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1) Potri.004G216500 [exp] 84 / 2e-19 AT4G01470 331 / 2e-115 tonoplast intrinsic protein 1;3 (.1) Potri.009G027200 [exp] 84 / 3e-19 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042375 [exp] 246 / 3e-81 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10007568 [exp] 196 / 1e-61 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10042385 [exp] 192 / 8e-61 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10026295 [exp] 123 / 8e-35 AT3G61430 66 / 2e-13 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10018256 [exp] 97 / 8e-24 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10040652 [exp] 93 / 2e-22 AT1G17810 367 / 2e-129 beta-tonoplast intrinsic protein (.1) Lus10036187 [exp] 92 / 4e-22 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10038324 [exp] 92 / 6e-22 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10003288 [exp] 89 / 9e-21 AT4G01470 388 / 6e-138 tonoplast intrinsic protein 1;3 (.1) Lus10027467 [exp] 82 / 2e-18 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.009G128100.1 pacid=42771676 polypeptide=Potri.009G128100.1.p locus=Potri.009G128100 ID=Potri.009G128100.1.v4.1 annot-version=v4.1 ATGATAAAAGTACTGAATTCCGTTGGTGCCCACAAAATCTTTTCATCAGAGATGTGGAGGGCAACCCTAACTGAGCTAGTAGCAACAGCTTGCCTGTTAT TCACATTAACCACTTCCATAATCTCATGCCTGGAATCAACCACTGCCGAGCCCAAGTTTCTAATCCCATTTGCAATCTTTGTCATTGCCTTCTTCTTCCT GTTGACCACGGTCCCTTTATCAGGGGGTCACATGAGCCCTGTGTTCACATTTATTGCCGCCCTTGAAGGTGTTATAACTCCTGTCCGTGCCTTGTTTTAT ATGTCGGCTCAATGTGTAGGCTCAATCGTGGCTTATCTAGTAATCAAGAGTGTAATGGACAAAAATGCAGAAGAAAAATATTCCCTGGGTGGCTGCATGA TTGATGGAAATGGTGAAGGGATAAGCCCTACAAATGCATTTATATTAGAATTCTCATGCACATTTATTGTGCTATTTGTTGGTGTAACCGTGGCATTTGA CAAGAGAAGATGCAAAGAGCTAGGTTTACAAATGGTATGTGGTATACTGGCAGGGGCAATGACACTTGCATTTTTTGTGTCCATTTCTGTAACGGGAAGA GCTGGATATGCTGGTGCGGGCTTGAACCCTGCAAGGTGTTTAGGGCCATCATTACTGAAAGGAGGCCGATTATGGTATGGCCATTGGGTATTCTGGGTGG GACCTTTTGTTGCTTGTATTGTTTATTATGGATTCACTCTGACCTTGCCT
AA sequence Show only first row Show all	>Potri.009G128100.1 pacid=42771676 polypeptide=Potri.009G128100.1.p locus=Potri.009G128100 ID=Potri.009G128100.1.v4.1 annot-version=v4.1 MIKVLNSVGAHKIFSSEMWRATLTELVATACLLFTLTTSIISCLESTTAEPKFLIPFAIFVIAFFFLLTTVPLSGGHMSPVFTFIAALEGVITPVRALFY MSAQCVGSIVAYLVIKSVMDKNAEEKYSLGGCMIDGNGEGISPTNAFILEFSCTFIVLFVGVTVAFDKRRCKELGLQMVCGILAGAMTLAFFVSISVTGR AGYAGAGLNPARCLGPSLLKGGRLWYGHWVFWVGPFVACIVYYGFTLTLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Potri.009G128100 [exp]	0	1

Compare expression of checked genes

Potri.009G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.