Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23400 85 / 6e-19 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT3G61430 83 / 4e-18 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G00430 83 / 4e-18 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT1G01620 82 / 1e-17 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT2G45960 82 / 1e-17 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G17810 81 / 2e-17 BETA-TIP beta-tonoplast intrinsic protein (.1) AT1G73190 80 / 2e-17 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT3G16240 76 / 5e-16 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT2G25810 76 / 5e-16 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT2G16850 76 / 9e-16 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128000 [exp] 366 / 1e-127 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.004G167000 [exp] 365 / 2e-127 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G127900 [exp] 347 / 4e-120 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.009G128300 [exp] 338 / 6e-117 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128100 [exp] 177 / 2e-54 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.006G098100 [exp] 83 / 3e-18 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 83 / 4e-18 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 81 / 1e-17 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.018G152100 [exp] 81 / 1e-17 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042385 [exp] 342 / 2e-118 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10007568 [exp] 334 / 9e-115 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10042375 [exp] 155 / 7e-45 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10018256 [exp] 79 / 9e-17 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10014978 [exp] 78 / 2e-16 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 77 / 4e-16 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10038324 [exp] 77 / 4e-16 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10027467 [exp] 77 / 5e-16 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10040652 [exp] 76 / 6e-16 AT1G17810 367 / 2e-129 beta-tonoplast intrinsic protein (.1) Lus10036187 [exp] 76 / 7e-16 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.009G128500.1 pacid=42772422 polypeptide=Potri.009G128500.1.p locus=Potri.009G128500 ID=Potri.009G128500.1.v4.1 annot-version=v4.1 ATGGCAGGAAACGCAGGAGTTGTTCAGGATGAAGAAATTGGTTATGGAGGGAACAAGGTCCGACCTTTTGCCTCTACGCCAAGGCCGTCAAAAACTGAGA GAGGGAAGCGAGATTCCTCTGCATTGAGCAGGATTCTGGGCTTGGATGAACTTGTTTCTTTGAATGTGTGGAGAGCATCCTTGGCAGAGGTTTTTGGCAC AGCAGTCCTAGTCTTTGCAATGGACACTATCGTAATTTCCTCCTACGAGACCCAAACCAAAACACCAAACCTTATAATGGCAACCTTAATAGCCATAACA ATTGCAATTCTCCTCCTAGCCACGTTTCCCATTTCCGGCGGCCACATCAACCCGGCCATCACTTTATCGGCTATGTTTACAGGCCTTATCACTGTTTCAC GCGCCGCCATATACATCTTGGCTCAATGTATTGGAGCCATACTAGGTGCACTAGCTCTGAAAGCTGTGGTTAATAGCACCATAGAGCAAACATTTTCACT CGGAGGCTGTACTCTAGAAATTGTTGCACCAGGACCAAGTGGGCCTGTTGCTATAGGGCTCGAAACGGGCCAGGCCCTTTGGCTGGAGATAATTTGTACA TTTGTCTTCCTATTTTCTTCGATATATATCGCCTTTGACAGGCGGCAAGCCATAGCCCTGGGCCGAGTTGTTTTTTGCTCAATAATTGGGCTGGTAGTGG GCCTTCTCGTGTTCATCTCGACAACAGTGACCGCAACCAAAGGCTATGCCGGAGTTGGGATGAACCCAGCTAGATGTTTAGGTCCGGCACTCGTTAGAGG TGGTCATCTGTGGAAGGGGCATTGGGTGTTTTGGGTTGGGCCTGTAGTTGCCAGCGTGGCGTTTTCTCTCTACACCAAGATGATTCCACGGGAACACCTC CTTGGAGCAGAATCAAAATAG
AA sequence Show only first row Show all	>Potri.009G128500.1 pacid=42772422 polypeptide=Potri.009G128500.1.p locus=Potri.009G128500 ID=Potri.009G128500.1.v4.1 annot-version=v4.1 MAGNAGVVQDEEIGYGGNKVRPFASTPRPSKTERGKRDSSALSRILGLDELVSLNVWRASLAEVFGTAVLVFAMDTIVISSYETQTKTPNLIMATLIAIT IAILLLATFPISGGHINPAITLSAMFTGLITVSRAAIYILAQCIGAILGALALKAVVNSTIEQTFSLGGCTLEIVAPGPSGPVAIGLETGQALWLEIICT FVFLFSSIYIAFDRRQAIALGRVVFCSIIGLVVGLLVFISTTVTATKGYAGVGMNPARCLGPALVRGGHLWKGHWVFWVGPVVASVAFSLYTKMIPREHL LGAESK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23400		PIP1D, PIP1;5	plasma membrane intrinsic prot...		Potri.009G128500 [exp]	0	1
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.008G120300 [exp]	2.00	0.9994
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191400 [exp]	3.46	0.9990
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.010G125300 [exp]	3.46	0.9992	CUT1.1
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024600 [exp]	3.87	0.9993
					Potri.017G047500 [exp]	5.00	0.9992
AT1G54820			Protein kinase superfamily pro...		Potri.005G036600 [exp]	5.47	0.9985
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G144900 [exp]	6.92	0.9984
AT2G45180			Bifunctional inhibitor/lipid-t...		Potri.006G256100 [exp]	7.48	0.9988
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G164800 [exp]	7.93	0.9988
AT2G45180			Bifunctional inhibitor/lipid-t...		Potri.018G025900 [exp]	8.06	0.9983

Compare expression of checked genes

Potri.009G128500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.