Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38800 387 / 3e-137 ATMTN1, ATMTAN1 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1) AT4G34840 370 / 1e-130 ATMTN2, ATMTAN2 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167200 [exp] 503 / 0 AT4G38800 368 / 1e-129 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026287 [exp] 413 / 1e-147 AT4G34840 356 / 3e-125 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1) Lus10042387 [exp] 410 / 5e-146 AT4G34840 341 / 1e-118 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [poplar] [flax] PUP PF01048 [poplar] [flax] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.009G128700.2 pacid=42771800 polypeptide=Potri.009G128650.1.p locus=Potri.009G128700 ID=Potri.009G128700.2.v4.1 annot-version=v4.1 ATGGCTCCTCATGGTGAGGGATCAGAGGAAGCCATGGTTGTTCAAGATGAGAATCGCAAACCCATCTCGTCCATCCTTATAATTATCGCTATGCAAACAG AAGCCATGCCTATTGTTAACAAGTTTCAGCTCAAAGAGGACCTTGATTCTGTGTTTCCGAAAGGGGTGCCTTGGGTCAGATATCATGGCGTTTACAAAGA TCTCCAAATCAACTTAGTATGGCCTGGAAAGGATTCAACTCTGGGGGTTGATAGTGTGGGCACAATTTCTGCATCTCTTGTGACCTATGCCGCTATCCAA GCATTACAGCCAGACTTAATTATTAATGCAGGCACTGCTGGTAGTTTTAAGGTCAAAGGAGCATCCATCAGTGATGTGTTTCTTGCATCTGACGTTGCTT TCCATGACAGAAGAATCCCTATTCCTGTTTTTGATCTCTATGGAGTTGGCTCAAGGCAGTCCTTCTCAACACCTAATCTCTTGAAGGAGCTTAACCTAAA GGCTGGGAAATTATCTACTGGAGACTCTCTGGATATGTCCCCACAAGAAGAAGCATCAATTGTTGCAAATGATGCTACAGTTAAGGACATGGAGGGAGCT GCTGTTGCTTATGTGGCTGATCTTTTGAAAGTCCCTGCAATATTCATAAAAGCTGTGACTGACATAGTGGATGGTGAGAAGCCACCTGCAGAGGAGTTCT TGCAGAATCTGGCTGCAGTGACTGCTGCACTTGACCAGGCAGTCACCCAAGTAGTTGATTTCATTAATGGAAAGTGTCTCTCTGAACTTTGA
AA sequence Show only first row Show all	>Potri.009G128700.2 pacid=42771800 polypeptide=Potri.009G128650.1.p locus=Potri.009G128700 ID=Potri.009G128700.2.v4.1 annot-version=v4.1 MAPHGEGSEEAMVVQDENRKPISSILIIIAMQTEAMPIVNKFQLKEDLDSVFPKGVPWVRYHGVYKDLQINLVWPGKDSTLGVDSVGTISASLVTYAAIQ ALQPDLIINAGTAGSFKVKGASISDVFLASDVAFHDRRIPIPVFDLYGVGSRQSFSTPNLLKELNLKAGKLSTGDSLDMSPQEEASIVANDATVKDMEGA AVAYVADLLKVPAIFIKAVTDIVDGEKPPAEEFLQNLAAVTAALDQAVTQVVDFINGKCLSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.009G128700 [exp]	0	1
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.006G266800 [exp]	8.66	0.7665
AT3G51730			saposin B domain-containing pr...		Potri.016G133400 [exp]	9.32	0.8133
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.010G191600 [exp]	19.89	0.7963
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.008G106300 [exp]	21.79	0.7596
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Potri.001G347700 [exp]	22.24	0.7357	PtrcGrx_C2
AT1G68300			Adenine nucleotide alpha hydro...		Potri.008G121900 [exp]	23.23	0.7995
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.014G060300 [exp]	23.64	0.7296
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Potri.008G039100 [exp]	25.45	0.7614
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.001G279300 [exp]	26.53	0.7822	ZIP6.3
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	26.98	0.7004

Compare expression of checked genes

Potri.009G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.