Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34850 631 / 0 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT1G02050 482 / 2e-170 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 480 / 6e-170 Chalcone and stilbene synthase family protein (.1) AT5G13930 270 / 3e-87 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT3G52160 56 / 2e-08 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT2G46720 53 / 2e-07 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT4G34510 52 / 5e-07 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT4G34250 51 / 1e-06 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT2G26640 50 / 1e-06 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT4G34520 50 / 2e-06 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167300 [exp] 721 / 0 AT4G34850 637 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.014G056300 [exp] 498 / 3e-176 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 496 / 2e-175 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 288 / 1e-94 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 287 / 5e-94 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 284 / 6e-93 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 282 / 3e-92 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 281 / 6e-92 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 280 / 2e-91 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026286 [exp] 647 / 0 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 636 / 0 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 482 / 3e-170 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 474 / 2e-167 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 285 / 3e-93 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 282 / 4e-91 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 277 / 5e-90 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 276 / 1e-89 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 204 / 2e-62 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 138 / 1e-38 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00195 [poplar] [flax] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G128800.1 pacid=42772765 polypeptide=Potri.009G128800.1.p locus=Potri.009G128800 ID=Potri.009G128800.1.v4.1 annot-version=v4.1 ATGGGGTATGAACAGATCGTGCAAGGAGGCTTGACAACAAAGGCCAACCCTGGCAAAGCTACAATTCTGGCTCTTGGCAAGGCATTCCCTCACCAGCTAG TCATGCAAGAGTTTCTGGTTGATGGATATTTCAAAAACACCAATTGTGATGATTTGGAGCTCAAGCAGAAGCTAACTCGACTCTGCAAAACAACGACTGT GAAAACTAGGTATGTGGTCATGTCAGATGAGATACTAAAGAAATACCCTGAACTTGCCATTGAAGGCCTCCCTACTGTCAAGCAGCGATTAGATATCTGT AACGATGCTGTCACACGGATGGCTATTGATGCTTCACGGGCTTGCATCAAGAAATGGGGCAGACCTGTATCTGATATAACTCACTTGGTCTATGTCTCAT CGAGTGAAGCTAGGCTACCAGGTGGCGACCTTTACCTAGCAGGAGGTCTTGGGCTCAGCCCTGAAACACAGCGGGTTATGCTATACTTTGCAGGTTGCTC TGGAGGTGTCGCTGGCCTTCGCGTTGCCAAGGATATTGCTGAGAACAATCCTGGAAGTAGAGTTTTACTGGCTACTTCTGAAACTACTATTATCGGGTTC AAACCACCAAGTGCAGATAGACCGTATGATCTAGTCGGGGTCGCACTCTTTGGGGATGGTGCTGGAGCTATGATCGTAGGCACAGATCCAATTCCGGTCA CTGAAAGCCCTCTCTTTGAGCTTCATACAGCAATCCAGAATTTCTTGCCAAACACTGAAAAGACTATTGATGGGAGGCTAACAGAGGAGGGTATCAGCTT CAAGCTATCAAGGGAGCTTCCTCAAATAATTGAAGATAACATCGAGGGATTCTGTCATAAGTTGATAGGAAACGCCGGACTGACTGGCAAGGATTACAAC AAGATGTTTTGGGCAGTCCATCCAGGCGGGCCCGCAATCTTGAATCGGATGGAAAAGAGATTTGATTTGCTGCCTGACAAGCTAAATGCTAGCAGAAGAG CTCTAATGGACTACGGCAATGCTAGCAGCAACACCATTGTGTATGTGCTGGAGTACATGATAGAAGAATGCAGGAAGATGAATGGAGGCTCTGAAAATTG TGATTGGGGCCTGATACTGGCTTTCGGACCTGGAATTACCTTTGAGGGTATTCTTGCAAGAAAACTAGCTGTGTAA
AA sequence Show only first row Show all	>Potri.009G128800.1 pacid=42772765 polypeptide=Potri.009G128800.1.p locus=Potri.009G128800 ID=Potri.009G128800.1.v4.1 annot-version=v4.1 MGYEQIVQGGLTTKANPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDLELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDIC NDAVTRMAIDASRACIKKWGRPVSDITHLVYVSSSEARLPGGDLYLAGGLGLSPETQRVMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGF KPPSADRPYDLVGVALFGDGAGAMIVGTDPIPVTESPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLSRELPQIIEDNIEGFCHKLIGNAGLTGKDYN KMFWAVHPGGPAILNRMEKRFDLLPDKLNASRRALMDYGNASSNTIVYVLEYMIEECRKMNGGSENCDWGLILAFGPGITFEGILARKLAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Potri.009G128800 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.018G090966 [exp]	5.83	0.7592
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.006G209200 [exp]	80.82	0.6958
					Potri.001G248704 [exp]	112.06	0.6440
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.018G149700 [exp]	122.41	0.6555
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	215.26	0.6520

Compare expression of checked genes

Potri.009G128800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.