Plant FIBer expression Database

Potri.009G129301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42146 45 / 9e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G167800
[exp]
189 / 6e-61 AT5G42146 44 / 6e-06 unknown protein
Potri.002G022100
[exp]
69 / 2e-14 ND /
Potri.009G129200
[exp]
46 / 2e-06 AT2G21180 55 / 2e-10 unknown protein
Potri.004G167700
[exp]
39 / 0.0007 AT2G21180 91 / 2e-24 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017216
[exp]
47 / 2e-06 ND /
Lus10034527
[exp]
45 / 8e-06 AT5G19875 52 / 2e-09 unknown protein
Lus10006311
[exp]
42 / 0.0001 AT5G19875 83 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G129301.1 pacid=42772283 polypeptide=Potri.009G129301.1.p locus=Potri.009G129301 ID=Potri.009G129301.1.v4.1 annot-version=v4.1
ATGTTCTTCATGTTGTGCATGACTGTCGCCTACAACATTTTCGAATTTCGACCTAGCCCAGAATGGTGGTCTGAAGTTTCTAGACAGGTCCATGGGCCCT
TTCTTCCGTGTAGAAATTGCAATCACATTTTCTTCTTTAAGGTGGTTCAAAACCTTTTTTATCAAACACTTGAGTGCGCAGGACCAAAGAAGAAGTTCTT
TGAGGATTCTACACTCAAAGCACAAAATTCCATAGCCAACTTTGATATTAAAGCAAACAAAGCCCGTCACCCCCTTGCATCAACAAGATTCTTTACTGAA
TTGCTTGAATTTAGAGATAAGAGAGAGGAAAAAAAAAAAAAAAAACAAGAAGAGATGGAGTGGTTCTATCCTAAGAGAAGGGGTCCTGAGTGGAAACAAG
GGTGGACAGGCCAGACCATGGGCTCAGTGTCTTCTCCACCACTCCCATTGCTAGCTATTTTTGGCATTGTCATTTCCCTGTTATGGCTCTCCCATTACAC
GGGCTATAAGGCTCAGTTGCACCACTCTGCAATCAACCTCCAAATATTCCTTGTCTTGCTGCCTATCCTCCTGATTTTATTCATGGCTTCATATTCTACT
AATTGGTTGCTCTACTATCGGCTCAGAAGTTCACAGCATGATTCAGATCCACGTTCCTCAGGCTCCTTTCCTTGGGGTATTGCCATTTTTGTGGTGGTGC
TTTTAATGTTGCTCTCTTATCGATCTACATTTCATTCCAAGTGGTTTGGACCTCTTCAGGGGTCAGATTAA
AA sequence
>Potri.009G129301.1 pacid=42772283 polypeptide=Potri.009G129301.1.p locus=Potri.009G129301 ID=Potri.009G129301.1.v4.1 annot-version=v4.1
MFFMLCMTVAYNIFEFRPSPEWWSEVSRQVHGPFLPCRNCNHIFFFKVVQNLFYQTLECAGPKKKFFEDSTLKAQNSIANFDIKANKARHPLASTRFFTE
LLEFRDKREEKKKKKQEEMEWFYPKRRGPEWKQGWTGQTMGSVSSPPLPLLAIFGIVISLLWLSHYTGYKAQLHHSAINLQIFLVLLPILLILFMASYST
NWLLYYRLRSSQHDSDPRSSGSFPWGIAIFVVVLLMLLSYRSTFHSKWFGPLQGSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42146 unknown protein Potri.009G129301
[exp]
0 1
Potri.018G104400
[exp]
8.66 0.8182
AT5G42200 RING/U-box superfamily protein... Potri.002G017400
[exp]
10.95 0.8504
AT4G35770 ATSEN1, DIN1, S... SENESCENCE ASSOCIATED GENE 1, ... Potri.002G014900
[exp]
19.07 0.8377
AT2G16050 Cysteine/Histidine-rich C1 dom... Potri.004G209200
[exp]
25.21 0.8374
AT1G79480 Carbohydrate-binding X8 domain... Potri.010G173500
[exp]
29.66 0.8344
Potri.005G038200
[exp]
32.86 0.7615
AT3G14310 ATPME3 pectin methylesterase 3 (.1) Potri.006G256700
[exp]
34.20 0.8314
AT5G32450 RNA binding (RRM/RBD/RNP motif... Potri.001G070200
[exp]
34.62 0.8207
AT2G42610 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10,... Potri.011G066400
[exp]
37.82 0.7994
AT5G27690 Heavy metal transport/detoxifi... Potri.010G024700
[exp]
37.84 0.8245

Potri.009G129301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.