Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TIM.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21170 479 / 8e-172 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) AT3G55440 322 / 8e-111 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168000 [exp] 583 / 0 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.009G031200 [exp] 319 / 1e-109 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.001G240300 [exp] 314 / 1e-107 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 295 / 3e-100 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 294 / 6e-100 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012171 [exp] 500 / 2e-180 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10007575 [exp] 471 / 4e-169 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10005461 [exp] 298 / 3e-101 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10040807 [exp] 298 / 3e-101 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 298 / 3e-101 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 275 / 1e-89 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00121 [poplar] [flax] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Potri.009G129500.1 pacid=42772864 polypeptide=Potri.009G129500.1.p locus=Potri.009G129500 ID=Potri.009G129500.1.v4.1 annot-version=v4.1 ATGGCAATGCTCTCCACCTCACTTTCCGGTCCAAAATCTGCCACTTCGTATTGCGCGCCTGAGTTCTCCGGTCTTCGCCGTTTATGTCCAAACAGCAACA ACAACAACAGCAACTCTCATTCCCAGTCTTTTCTTCGCTTCTGTTCTCCCCGAAAACCTCTTAAAAGCGTTGTTGCCATGGCTGGCACTGGAACGTTCTT TGTTGGAGGAAATTGGAAATGTAATGGAACAAAAGAATCCATTACCAAGCTTGTTTCAGACTTGAACAGCACGAAGCTGGAGTCTGATGTTGATGTTGTT GTAGCACCTCCCTTTGTTTACATCGATCAGGTGAAGTCTTCCTTAACTGACAGAATTGAGATAGCAGCTCAAAACTCTTGGGTCAGTAAAGGTGGGGCTT TCACAGGAGAAATCAGTGTGGAACAATTGAAAGATATTGGCTGCAAGTGGGTTATTCTTGGGCATTCTGAGCGTAGGCATGTAATTGGCGAAGACAATCA GTTTATAGGAAAGAAGGCAGCTTATGCCTTAAGCCAGGGTCTTGAGGTAATTGCTTGTATTGGTGAACTGCTAGAAGAAAGAGAAGCAGGGAAAACTTTT GATGTTTGTTATCAGCAACTGAAGGCATTTGCAGATGCTGTGCCCAGCTGGGATAATATTGTTATTGCATACGAACCTGTGTGGGCTATTGGTACTGGTG TAGTGGCCACACCTGTGCAGGCTCAGGAAGTGCATGTAGCTATCCGTGATTGGCTTAAAAACAATGTCTCGGCAGAAGTTGCATCAAAAACACGTATTAT CTATGGAGGATCTGTAAATGGAGGCAATTGTGCTGAACTTGCGAAGCAAGAAGATATTGATGGTTTCCTTGTTGGTGGTGCATCCTTGAAGGGCCCCGAG TTTGCTACCATTGTCAATTCTGTAACATTCAAGAAAGTTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.009G129500.1 pacid=42772864 polypeptide=Potri.009G129500.1.p locus=Potri.009G129500 ID=Potri.009G129500.1.v4.1 annot-version=v4.1 MAMLSTSLSGPKSATSYCAPEFSGLRRLCPNSNNNNSNSHSQSFLRFCSPRKPLKSVVAMAGTGTFFVGGNWKCNGTKESITKLVSDLNSTKLESDVDVV VAPPFVYIDQVKSSLTDRIEIAAQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDNQFIGKKAAYALSQGLEVIACIGELLEEREAGKTF DVCYQQLKAFADAVPSWDNIVIAYEPVWAIGTGVVATPVQAQEVHVAIRDWLKNNVSAEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPE FATIVNSVTFKKVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	0	1	TIM.2
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	2.00	0.8271
AT3G03330			NAD(P)-binding Rossmann-fold s...		Potri.013G084100 [exp]	2.64	0.7836
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.004G168000 [exp]	3.46	0.7692
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	4.47	0.8019
AT3G06470			GNS1/SUR4 membrane protein fam...		Potri.003G019700 [exp]	6.32	0.7836
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	7.21	0.7663
AT3G43660			Vacuolar iron transporter (VIT...		Potri.001G456000 [exp]	9.48	0.7763
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	9.48	0.7606
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.008G138400 [exp]	11.40	0.7362	EXGT.4
AT4G17370			Oxidoreductase family protein ...		Potri.003G078500 [exp]	13.85	0.7883

Compare expression of checked genes

Potri.009G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.