Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21150 508 / 0 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168400 [exp] 541 / 0 AT2G21150 525 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Potri.015G102501 [exp] 46 / 2e-06 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012170 [exp] 486 / 4e-174 AT2G21150 520 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Lus10007576 [exp] 486 / 6e-174 AT2G21150 522 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Lus10007574 [exp] 85 / 7e-18 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10012172 [exp] 66 / 2e-11 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04921 [poplar] [flax] XAP5 XAP5, circadian clock regulator
Representative CDS sequence Show only first row Show all	>Potri.009G129700.1 pacid=42772311 polypeptide=Potri.009G129700.1.p locus=Potri.009G129700 ID=Potri.009G129700.1.v4.1 annot-version=v4.1 ATGTCGGGCATGGGAGACGGGTACGTGGGCACGGCCCAAGACGGCGTGAGGATACGGCGGTTACAGAAGCAGAGAGAAGCTGAACGCCTTAAAATCCAAG AGCTCAAAACCAAGTCTGCCTCCGATAACGGCCAGCCTGGTCTCCTCCAATTCGGGTCAAGTACCTCCGAGATTCTTGAGACTGCATTTAAGAAGGAAAC TGTGGGTTTGGTTACAAGAGAACAGTACGTGGAGAAGAGGGTTAATATTCAGACCAAGTTTGAAGAAGAAGAGAAGGAGAAACTAGAAAAGCTACGGAAA GAGGAGGAGGATCTTCAGTTGCAGAAGCGTAAAAAGAGGAAGATTAAGGGGAGTTCTAAGTTGTCTTTTGCGGATGATTTTGAGAATGGAAGTGACGAAG AGGATGTTGAAAACAAAACCTCAGAGCCAAATAATTTAGTGCGGGGGAAATTTGGAAAAGATCCCACTGTGGAAACAAGCTTTTTGCCTGACAGTGAGCG AGAGGCAGAGGAGCAGGCTGAGCGTGAAAGGCTGCGGAAACAGTGGCTTCGTGAACAGGAACAGATTCAAAATGAGCCCCTTGAAATCACTTACAGCTAC TGGGATGGAGCAGGCCATAGAAGAGTGATCCAGGTTCGTAAAGGTGATGCCATAGGAGAGTTTCTTCGGGGAGTTCAGCAACAACTTGCGCCAGAGTTCA GAGAAATTAGGACTACTTCTGTGGAGAATTTGCTTTATGTGAAAGAGGATCTTATCATTCCTCATCAACACAGTTTCTATGAGTTGATCGTTAACAAAGC TAGGGGAAAAAGTGGACCGCTCTTCCACTTTGACGTGCACGAGGATGTGCGAACAATTGCTGATGCAACCATAGAGAAGGATGAGTCCCATGCTGGTAAA GTTGTTGAGAGGCACTGGTATGAAAAGAACAAACACATCTTTCCTGCTTCGAGATGGGAGATATATGATCCGACAAAGAAGTGGGAGCGTTACACCATCC ACGGGGATTGA
AA sequence Show only first row Show all	>Potri.009G129700.1 pacid=42772311 polypeptide=Potri.009G129700.1.p locus=Potri.009G129700 ID=Potri.009G129700.1.v4.1 annot-version=v4.1 MSGMGDGYVGTAQDGVRIRRLQKQREAERLKIQELKTKSASDNGQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQTKFEEEEKEKLEKLRK EEEDLQLQKRKKRKIKGSSKLSFADDFENGSDEEDVENKTSEPNNLVRGKFGKDPTVETSFLPDSEREAEEQAERERLRKQWLREQEQIQNEPLEITYSY WDGAGHRRVIQVRKGDAIGEFLRGVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGK VVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.009G129700 [exp]	0	1
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	2.23	0.8667
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Potri.010G065400 [exp]	4.89	0.8344
AT4G16440			ferredoxin hydrogenases (.1)		Potri.016G008700 [exp]	5.91	0.7862
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	6.00	0.8381
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.004G194200 [exp]	9.27	0.7785
					Potri.019G120766 [exp]	9.89	0.8469
					Potri.005G096332 [exp]	11.61	0.8400
					Potri.001G439825 [exp]	13.49	0.8309
					Potri.005G096266 [exp]	14.83	0.8369
AT3G25910			Protein of unknown function (D...		Potri.006G154300 [exp]	22.24	0.7759

Compare expression of checked genes

Potri.009G129700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.