Plant FIBer expression Database

Potri.009G129800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21160 244 / 4e-81 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
AT2G16595 234 / 2e-77 Translocon-associated protein (TRAP), alpha subunit (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G168500
[exp]
392 / 2e-139 AT2G16595 259 / 4e-87 Translocon-associated protein (TRAP), alpha subunit (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012169
[exp]
333 / 3e-116 AT2G16595 277 / 3e-94 Translocon-associated protein (TRAP), alpha subunit (.1)
Lus10007577
[exp]
328 / 2e-114 AT2G16595 276 / 1e-93 Translocon-associated protein (TRAP), alpha subunit (.1)
Lus10026282
[exp]
320 / 9e-111 AT2G16595 254 / 5e-85 Translocon-associated protein (TRAP), alpha subunit (.1)
Lus10042391
[exp]
233 / 4e-76 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1)
PFAM info
Representative CDS sequence
>Potri.009G129800.3 pacid=42771614 polypeptide=Potri.009G129800.3.p locus=Potri.009G129800 ID=Potri.009G129800.3.v4.1 annot-version=v4.1
ATGGAGAATCTCAGGTTTTTCTTTTTCGCTCTCCTCCTCCTCGTTTCTCCTCTCCTTCAAGTTGCTAGGAGTCAGTCAGATTCAGATGCTGAAGTCGCAG
GGACTGTGGAAGAAGTCAGTGATCTTGGGATTGTCGGGGAGAACGCACAGGATTTTGGTGATGAGAATTTTAGCCAAGCTCTAGGGGTTGATGTAGTGTG
TGTTTTCCCAAAAAACAGTGCACGTTTGGTGAATGCTGGAGAAGAGACTGAACTACTAGTTGGAGTGAGAAATGATGGGGAGTTGCCCATAACTGTCGTT
GGAATTAGGGCCAGTGTTCATCTTCCTTTTGATCATAAGCTACTGGTTCAGAATCTATCTGCTCAGGGCTTCAACAATGCAACTATTCCAGCATCTGCTC
AGGCTACTTTCCCATACATCTTTGCTGTCAGCAAGTACTTGCAGCCTGGAAGTTTCGATCTTGTGGGCACCATCATTTTTGAGATAGACCAGCAACCATA
CCAAAGCACCTTCTACAACGGTACCATTGAAGTAGTTCAGTCTGTTGGTTTCCTAAGCACGGAGTCAGTTTTTCTTGTTACCCTTGGAATTGCTCTTCTT
GTCCTCTTTGGTCTATGGCTTCAAAGCCAAATTCAGAACCTTTCTAAGAAATCAAAGAGGGCTGCGAAGGTGGAGGTTGGAACTGGGGCCAGAGATGCCT
CCGTGGATGAATGGCTTCAGGGAACAGCATTGAGTCAGTCACAGTCCCAGAAGTCAAAGAAGAAGAAGTAA
AA sequence
>Potri.009G129800.3 pacid=42771614 polypeptide=Potri.009G129800.3.p locus=Potri.009G129800 ID=Potri.009G129800.3.v4.1 annot-version=v4.1
MENLRFFFFALLLLVSPLLQVARSQSDSDAEVAGTVEEVSDLGIVGENAQDFGDENFSQALGVDVVCVFPKNSARLVNAGEETELLVGVRNDGELPITVV
GIRASVHLPFDHKLLVQNLSAQGFNNATIPASAQATFPYIFAVSKYLQPGSFDLVGTIIFEIDQQPYQSTFYNGTIEVVQSVGFLSTESVFLVTLGIALL
VLFGLWLQSQIQNLSKKSKRAAKVEVGTGARDASVDEWLQGTALSQSQSQKSKKKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21160 Translocon-associated protein ... Potri.009G129800
[exp]
0 1
AT5G02280 SNARE-like superfamily protein... Potri.009G069800
[exp]
1.73 0.9321
AT5G14030 translocon-associated protein ... Potri.001G323400
[exp]
2.23 0.9491
AT4G18760 AtRLP51 receptor like protein 51 (.1) Potri.011G069500
[exp]
4.47 0.9333
AT2G22425 Microsomal signal peptidase 12... Potri.008G175775
[exp]
8.36 0.9230
AT3G07930 DNA glycosylase superfamily pr... Potri.012G037700
[exp]
8.60 0.8903
AT5G56150 UBC30 ubiquitin-conjugating enzyme 3... Potri.019G083800
[exp]
9.16 0.9202 UBC.5
AT2G16595 Translocon-associated protein ... Potri.004G168500
[exp]
11.13 0.9313
AT4G08685 SAH7 Pollen Ole e 1 allergen and ex... Potri.005G167900
[exp]
11.66 0.9148 Pt-SAH7.2
AT3G08900 RGP3 reversibly glycosylated polype... Potri.008G097600
[exp]
12.72 0.9261 Pt-RGP3.4
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Potri.004G218300
[exp]
14.83 0.9280

Potri.009G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.