Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38760 1971 / 0 Protein of unknown function (DUF3414) (.1) AT4G10845 52 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168700 [exp] 821 / 0 AT4G38760 498 / 7e-155 Protein of unknown function (DUF3414) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007578 [exp] 2224 / 0 AT4G38760 1812 / 0.0 Protein of unknown function (DUF3414) (.1) Lus10012168 [exp] 2189 / 0 AT4G38760 1804 / 0.0 Protein of unknown function (DUF3414) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G130000.2 pacid=42772177 polypeptide=Potri.009G130000.2.p locus=Potri.009G130000 ID=Potri.009G130000.2.v4.1 annot-version=v4.1 ATGTCAAACCCTAAAACCGTCGATTCCTCGCTTTGGTTTGATTCTTTCACTACCACCCTCACGGACCTCGAAAACGCCTCTCTCTCCTCTGACCTCCCTC CTCACCTCGCGAAGAAGTTGAAGGAGAATCACGTATGGTTTGTGGAGACTGTTTCTCTATTTAAGAAACCGAATGCGAATTCACGAGAGGCTTTGAATTC GGAGATAATCAAGATTGGATCTCATGAAGTTACTGTCAAGCCTGAATTGAAAGTTAAAGCTTTGCACATTAGCTCTTATCTGTGTTTAGATGAGGTGCAG TCGTATATTCTTGTTGAGAGGTCTCTTGAATGTGATGATTTAGCGGTTGATTCTATGGTTGAAGACTGTCTTCATGTGGTATTGCTCCAGTACTACATCG AGCGACAATGCTTGCTGAAGTGTTCCAGGCGAATTCTTATGCATGCTTTGTATGTTGGAATTTGCTCCAAAGAAGAAAATGTTGCAAGGGACGAAGCAGC AAAGTTGATTTCAGATGGGTTGGAACATAAATTAATCTCTGTCTTGCAGGACCTTTTATCTTCCAGTCATCCTGAGCAAATGGATGTTGATCTTTTCACT TTGTGGGCTGAGGAGACACTGATTGAAGACAATTTGGTTTTGGACATTCTTTTCCTGCTTTATTATGAGTCACTTTGTACTTGTAATGGTGAAAAATGGA AAAAGTTGTGCTTGCTTTACAAGGGGATCTTATCTGGTTCGTATAACTTTGGAAGGCTGGCAATCTCAGCTGAAGCACTAAAGTCTTCTTATCATGCCAG CACCCAGCTCCTACTTATTCTTATAGAAACCCTGGACCTTGAAAATCTTCTTCAACTGGTGCATGATGGAGTACCTTTCAGACAGGGTCCTTCTGTGTTT TCCGTGACTGATATCCAACAGATGGATGTGTTAATATCTAGTTTTGTTACGCTTGGAACGAGAGAAGCTGGCCCACTAATTCTTGCATGGGCAGTATGTC TCTGTCTAATTTCATCACTTCCTGGAAGTGAGGAAAATAGTGTACTAATGGAAATTGATCATGTTGGCTATGTTCGTCAAGCCTTTGAAGGTGCATCGCT GAGTATTTTTGTCGACGTTCTTGAAAGTGATTTGTTGAAGGAATCAGATGGACCTGTTGCTGGTTATCGAAGTGTCTTGAGAACCTTTATTTCTGCATTC ATTGCATCTTATGAGATTAATCTTCAGTTAGAGGACAGCACCCTCAGTCTTATACTGGATATCCTTTGTAAAATATATCGGGGAGAGGAGTCACTTTGTA TTCAGTTTTGGGACAAGGAAAGTTTTATTGATGGTCCTATTCGGTGTCTTCTTTGCAACTTGGAAGGTGTATTTCCCTTCAGGACTGCAGAATTTGTTCG TCTTCTATCAGCCCTTTGTGAAGGAAGTTGGCCAGCAGAATGTGTGTATAACTTTCTTGATAAATATGTTGGTGTATCTTCCTTGTTTGAAATTACTAGC GAGTCCCTGGTTGACAGCGCCTCTCAGGCAGTTGAAACTCAACTGCCACTGCATGTTCCTGGGGCAGACAGTTTAATCATTCCTAGTAAAACTCGTGGAC ATGTTTTAAAAGTTATTGATGGGAATACTGCTCTTGTACGTTGGGAGTATGCACAATCAGGGGTGCTTGTCTTGCTCCTGCGCTTGGTCAATGAGCTTTA TCTGGAGAGCAACAAGGAAGTTTTTCTTACTTTTGACCTACTGAGCCGACTAGTGTCTTTTAACACGGCCATAACTTTTACAATGATGGAAATCGGCAAC ACATTTTATCTTCAAGCCGCAGGAGTGAATGAGCAGATGGAAAAGAAGTTTTGGGTAGTTGACGTCATTTGTGCTGTGATAAAAAAATCGTCTTCTAATT CTGGCAATGCTGCAGTAATGTCCATGGGTGTCAGTATTTTAGCAAGCATGTTGACATGTGCTCCATCTCATATTGCTGCTGTTGTCCTGAAAGCAAATAT ATTTGATGCGACTTGGAAGACAAGTACCTTTGAAGTTGGCTGTGATGGCCCATCAAGTGGATCGTGGTTGCTTTCTGGAAAACTGGTAAAAATGCTATTA CTAGACTCTGAGCAAAATGATTATGACAAACCATTAACTATATCAGTGCTGGATTTTACCATGCAGCTAGTGGAGGCAAGATTAGAGAATGATCTGGTTC TGGCCTTGGTCGTTTTCTCTCTGCAGTATATTCTCGTTAATCATGAGTACTGGAAATACAAGGTGAAGCATGTTAGATGGAAAGTAACACTGAAGGTACT GGAAGTGATGAAAGCATGCATCACATCAGTCTCATTCTCTGAAAAATTGGCCCTGGTAATCCGTGATATGTTACTCAATGATTCTTCCATCCACAATGCA CTCTTTCATCTTGCTTGCACAACCAAGCAAACCTTAGAGAATCTTTATGTCAGCCGTCTTGTTGAACTGGAGGAGATTGAAGGGTGTCAGCTTGCTATTA GCTCTGCTTTGGATATTATATATATGATGCTCTCCAAATTTTGTAAGGATATCTCGCCGAATCTTCCGGTCTTTCACCTATCAGTGCTGTCATCTACTAT GAAACCAATCCCTGTTGTTGCGGCTGCTGTATCTTTGATATCATATTCTCGGTCTCCTGCAGTACAGGTTGGTGCTGCTAAGGTGTTATCTATGTTGTTT ACAACAGCAGATTATATGCAACCATATTTGTCTGGCAATGTATGCTTTGGTTTGGATGATAAGCAGATCGCAGATATGAGGCATTTTGTTAAAAGCACAT TAGTTAAGCAGTTGGAATGGAATGAAGATTTATTTGTTGCTACAGTCAATCTGCTTACTTATGCAGCTCGTTATCAGCCTGCTTATCTTCTTGCTATTTT TTCCCTAAAAGAGGATACAGAGGTCCAGTTGAGTAATGGTGGTGGCACAAAGCAGGCTATAAATGAACTTTCAAATGGTTCACTGTGTTCCAAGAAATCA AGTCTGTTAGATGGGCTTATGCAATATGTTGAAAGATCAAACGAATTTATTGACAGCAATCCCCGCGTACTGTTCACTGTTCTTGATTTCCTCAAGGCAC TATGGCAAGGGGCTGTTCATTATATATCTATATTGGAGTGCTTGAAGAGCTCTGGAAAGTTCTGGAAACAGTTGTCCAATTGTATCTCATCAGATGCTCG CTCGATAACATCACCTTTTGAGAATGTCGCCGAAACTCAGTCTCAAAGCTTGGCATTAAAATATCAATGTCAATCTGCTATATTGGAAATGATGGCACAT GACATGTTCCTGAAGAAGAAGTTAGTACATGCTGAGTCTGTCTTAAAAGAAGTGTCTGAATTGGAGAGAAATAATAAGGCATCAAGCACAGAAAAATCAA AATCAGTAAATGATTGTGAGTTGAGAGATATCTTGTCAAGCTGGTGGAAGAGACCGATTTTTGGCAATCTGATCAATTTATATGCTTCTTGTGAATATGA CAATGAAATATCTAATCGTGCAAAGGTCGCTGCCAGTTTGTTCATTGTCCATGCAATGGGGAAATTAGTGATTGGTAATGCAGGAAGTTTATCAATATCA TTGGTTGAGAAGATCCAGATCACTTTTAAACATTTGAGTTGTCAGCTTGCCTTTTCTGAATTGTTGGCACAATACTCTCAGCAGGGTTACAGTGAAGGAA AGGAACTAAAAGGTCTGATCCTCAACGATCTCTATCATCATCTACAAGGAGAGCTAGAAGGTCGTAAAATTGGTCCTGGACCGTTTAAGGAACTCTGTCA GTATCTGGTGGAATCAAACTGTTTGCTAAGCTATCAATACAAGTACGGTGGCGATCATTATGGAAACACCAAAGATATTCACTTGTATGACCTTATGCGC ATACGATCAGATTTGGGATTAAATATGTGGGATTATACAGATTGGAAAGATTCAAAAGCAATTGCACAAACTATGCTGGAGTGCTTCCAGGATGCAAATT CAATGGTTTTACTAGCTTCTTCAAAGCTTTCTGCACTGAAAGCATTGCTAACTGCCCTGATTATGTGGGAAGATAATTCACCAGAGAATAAGGGCACTAC TGAGGGGAAGATTCCTGACCAACTCTGCTTTTCATGCATCGACAACATATGCAAATCTTTTCGCACCACAGTGGAATCGCTAGCTCCAGTTCTGGATGCC TCTGAAGAGATTCTTGATTTCCTTGCTGCACTAGCAGAATTAATTCTACATCTCATGAAATCTGCGCAGAGCAACCTATCTTTATCCATTTGTATACTTG TCTTGAAAACATCAGGTTCTGGCCTCAAATTGCTGGGTGATTTCAGGTCATCTGCTACTGGGGTTAAAAAAACAATGAAGCTTCTGCTCATGCTGCTTCT TTTCACTTTGGAGATTAGTAATACTTCAGATAAGGAATCTGAAGACTTTGCTGAGGTTTCAAATGGTTGTCTGGGGCTTTTGCCTACCCTGTGCAATTGC ATCACAGCTACTGAGCATTCTTCCCTCTCCTTGGCTACCATTGACTTAGTACTGACAAGTTTTTTGACACCTAACACTTGGTTCCCCATCATACAGAAAC ATCTCCAATTACCTCATGTCATTCTGAAAGTTCATGATAAAAGTTCTTTCTCATCTGTTCCAATTACATTGAAGTTCCTTCTGACTCTGGCACGTGTGAG AGGAGGTGCTGAAATGCTCCTTAGTGCTGATTTCTTCTCTTCTCTTAGAGCTTTGTTTGCAGACTCATCAGATGTTGGGCCTTCCACAGTTATGACCAAT GATAGTGGCTTCCTAAAGTCTTCTGACAAAATAGAAAAGCCTCAATCTATTTGGGGCCTTGGCTTGGCAGTGATCGTAGCTATGGTTCAATCTTTAGGAG ACAGTTCTTCTTACACCGATATTCTGGACAACGTGATACCTTATGTTTTTTCAGAGAAAGCTGATCTGATTTCTTATTATCTCAGTGCACCTGACTTTCC ATCTGATAGTCATGACAAGAAAAGACCACGGGCGAAAAAGACAGAGACTTCTCTTAGTGCTCTAAAAGAAACAGAGCATACTCTCATGTTGATGTGTGCG CTAGCTAGACATTGGAGGTCATGGGTTAAGGTCATGAAAGAAATGGATTCAGAGCTGCGGGAGAAAAGTATTCATTTATTAGCCTTTATTAGCCGAGGAA CTCATCGCTTTGGAGAATCTTCCAGCAGAACTGCCCCCCTCTTATGCGCTCCTATCCTTAAAGAGGAGTTAGAGTGCTGCAAGAAACCATCATTTCTAAA CAGCAGGAATGGATGGTTTGCTCTTTCACCTCTCTGTTGTGTGTCAAAGCCCAAGTCTTCTGCTTTCTCAGCCAACAGTAGTGCATTTGTAGTCAAGGGA CAGTCAACTGAAATTACCAATCCAGTTTCTCCAACATATTTTTCAGACTTGGTTGCCCTGGAGATCTACAGGATTGCTTTTCTTCTCTTGAAATATCTCT CTATGGAAGCAGAAGGTGCTGCTAAAAGGTCCGAGGAAATGGGATTTGTTGATCTTGCTAAGATTCCTGAGCTGCCGATGCCAGAGCTATTGCATGGCTT GCAGGATCAAGCAGTTGCTATTGTTTCTGAACTGTGTGGTTCAAACAAATCAAAGCACATGAATCCTGAAATCAAATCAGTCTGTCTCTTACTACTACAA ATAATGGAGATGGCCCTGTATTTGGAGCTCTGCGTTTTACAGATTTGTGGCATAAGACCTGTATTAGGTCGCGTGGAGGATTTTTCAAAGGAAGTGAAAT TGTTATTAAAAGCCATGGAAGGGCATACGTTCATAAAAGCATCAGTGACATCCTTGAAACACATAATATCTCTTGTCTATCCTGGATTGTTGTTACAGAC CGAAGGTTTCCTGTGA
AA sequence Show only first row Show all	>Potri.009G130000.2 pacid=42772177 polypeptide=Potri.009G130000.2.p locus=Potri.009G130000 ID=Potri.009G130000.2.v4.1 annot-version=v4.1 MSNPKTVDSSLWFDSFTTTLTDLENASLSSDLPPHLAKKLKENHVWFVETVSLFKKPNANSREALNSEIIKIGSHEVTVKPELKVKALHISSYLCLDEVQ SYILVERSLECDDLAVDSMVEDCLHVVLLQYYIERQCLLKCSRRILMHALYVGICSKEENVARDEAAKLISDGLEHKLISVLQDLLSSSHPEQMDVDLFT LWAEETLIEDNLVLDILFLLYYESLCTCNGEKWKKLCLLYKGILSGSYNFGRLAISAEALKSSYHASTQLLLILIETLDLENLLQLVHDGVPFRQGPSVF SVTDIQQMDVLISSFVTLGTREAGPLILAWAVCLCLISSLPGSEENSVLMEIDHVGYVRQAFEGASLSIFVDVLESDLLKESDGPVAGYRSVLRTFISAF IASYEINLQLEDSTLSLILDILCKIYRGEESLCIQFWDKESFIDGPIRCLLCNLEGVFPFRTAEFVRLLSALCEGSWPAECVYNFLDKYVGVSSLFEITS ESLVDSASQAVETQLPLHVPGADSLIIPSKTRGHVLKVIDGNTALVRWEYAQSGVLVLLLRLVNELYLESNKEVFLTFDLLSRLVSFNTAITFTMMEIGN TFYLQAAGVNEQMEKKFWVVDVICAVIKKSSSNSGNAAVMSMGVSILASMLTCAPSHIAAVVLKANIFDATWKTSTFEVGCDGPSSGSWLLSGKLVKMLL LDSEQNDYDKPLTISVLDFTMQLVEARLENDLVLALVVFSLQYILVNHEYWKYKVKHVRWKVTLKVLEVMKACITSVSFSEKLALVIRDMLLNDSSIHNA LFHLACTTKQTLENLYVSRLVELEEIEGCQLAISSALDIIYMMLSKFCKDISPNLPVFHLSVLSSTMKPIPVVAAAVSLISYSRSPAVQVGAAKVLSMLF TTADYMQPYLSGNVCFGLDDKQIADMRHFVKSTLVKQLEWNEDLFVATVNLLTYAARYQPAYLLAIFSLKEDTEVQLSNGGGTKQAINELSNGSLCSKKS SLLDGLMQYVERSNEFIDSNPRVLFTVLDFLKALWQGAVHYISILECLKSSGKFWKQLSNCISSDARSITSPFENVAETQSQSLALKYQCQSAILEMMAH DMFLKKKLVHAESVLKEVSELERNNKASSTEKSKSVNDCELRDILSSWWKRPIFGNLINLYASCEYDNEISNRAKVAASLFIVHAMGKLVIGNAGSLSIS LVEKIQITFKHLSCQLAFSELLAQYSQQGYSEGKELKGLILNDLYHHLQGELEGRKIGPGPFKELCQYLVESNCLLSYQYKYGGDHYGNTKDIHLYDLMR IRSDLGLNMWDYTDWKDSKAIAQTMLECFQDANSMVLLASSKLSALKALLTALIMWEDNSPENKGTTEGKIPDQLCFSCIDNICKSFRTTVESLAPVLDA SEEILDFLAALAELILHLMKSAQSNLSLSICILVLKTSGSGLKLLGDFRSSATGVKKTMKLLLMLLLFTLEISNTSDKESEDFAEVSNGCLGLLPTLCNC ITATEHSSLSLATIDLVLTSFLTPNTWFPIIQKHLQLPHVILKVHDKSSFSSVPITLKFLLTLARVRGGAEMLLSADFFSSLRALFADSSDVGPSTVMTN DSGFLKSSDKIEKPQSIWGLGLAVIVAMVQSLGDSSSYTDILDNVIPYVFSEKADLISYYLSAPDFPSDSHDKKRPRAKKTETSLSALKETEHTLMLMCA LARHWRSWVKVMKEMDSELREKSIHLLAFISRGTHRFGESSSRTAPLLCAPILKEELECCKKPSFLNSRNGWFALSPLCCVSKPKSSAFSANSSAFVVKG QSTEITNPVSPTYFSDLVALEIYRIAFLLLKYLSMEAEGAAKRSEEMGFVDLAKIPELPMPELLHGLQDQAVAIVSELCGSNKSKHMNPEIKSVCLLLLQ IMEMALYLELCVLQICGIRPVLGRVEDFSKEVKLLLKAMEGHTFIKASVTSLKHIISLVYPGLLLQTEGFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	0	1
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040300 [exp]	1.41	0.8962
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	2.23	0.8989
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	3.46	0.8892
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Potri.001G341900 [exp]	6.92	0.8840
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	7.07	0.8761
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	7.07	0.8608
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Potri.016G144200 [exp]	8.18	0.8117
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	11.18	0.8470
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	11.22	0.8674	RGA.64
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	11.95	0.8582

Compare expression of checked genes

Potri.009G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.