Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38710 191 / 2e-56 glycine-rich protein (.1.2) AT3G26400 62 / 4e-10 EIF4B1 eukaryotic translation initiation factor 4B1 (.1) AT1G13020 49 / 3e-06 EIF4B2 eukaryotic initiation factor 4B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169100 [exp] 462 / 7e-163 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2) Potri.010G048200 [exp] 66 / 2e-11 AT3G26400 349 / 1e-114 eukaryotic translation initiation factor 4B1 (.1) Potri.008G185400 [exp] 55 / 6e-08 AT3G26400 325 / 5e-105 eukaryotic translation initiation factor 4B1 (.1) Potri.017G041300 [exp] 53 / 3e-07 AT1G11480 263 / 3e-80 eukaryotic translation initiation factor-related (.1.2) Potri.007G119200 [exp] 53 / 3e-07 AT1G11480 145 / 7e-37 eukaryotic translation initiation factor-related (.1.2) Potri.011G031900 [exp] 44 / 0.0002 AT1G11480 318 / 9e-101 eukaryotic translation initiation factor-related (.1.2) Potri.014G123100 [exp] 42 / 0.0005 AT3G26400 55 / 3e-08 eukaryotic translation initiation factor 4B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012166 [exp] 169 / 6e-49 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2) Lus10036874 [exp] 70 / 1e-12 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1) Lus10006224 [exp] 63 / 2e-10 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006469 [exp] 51 / 7e-07 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1) Lus10018497 [exp] 51 / 1e-06 AT1G11480 242 / 5e-72 eukaryotic translation initiation factor-related (.1.2) Lus10039708 [exp] 50 / 2e-06 AT1G11480 237 / 3e-70 eukaryotic translation initiation factor-related (.1.2) Lus10011412 [exp] 45 / 7e-05 AT3G26400 387 / 3e-129 eukaryotic translation initiation factor 4B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06273 [poplar] [flax] eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence Show only first row Show all	>Potri.009G130200.1 pacid=42772748 polypeptide=Potri.009G130200.1.p locus=Potri.009G130200 ID=Potri.009G130200.1.v4.1 annot-version=v4.1 ATGGCGGCAACAGTCTCTTCTCCTTGGAGCAAACCCGGTGCGTGGGCTTTAGACGCCGAAGAACACGAAGCTGAACTCCAGCAAGAACACGAAAATTCCC AACAAGCATCCACTCTCGCCGCTCAACCACTCGGTGGCGTTGCTGAATTCCCTTCTTTAGCTGCAGCCGCCGCCACCAAACAACCCAAAAAGAAAAAAAA CCAAACCTTATCTCTAGCTGAGTTTTCTAATTATTCTCTGGCCAAGTCGAGTCACGAGCCTGATCTCTTCAATCTCCCAACTAGACCCCGCGAACGCTCC GCTGAAGAGCTCGACAGGGCCCGCCTCGGCGGCGGGTTTAAATCGTATGGTTTAAGTTATCGTAACGGAGGAGAAGAATCGAATTCGAGATGGGGTGGTG GTGGTAACGGAAACTCTAGGGTTTCTAATAGGGAGTCGAGTAAGGAATTTGCTCCTTCACGAGCGGATGAGATTGATGACTGGTCGAAAACGAAGAAATC CCCAGCAGGGAATGTATACGAGAGGAGGGAAAGGGAGAGGGGATCTTCGTTTTTCGATTCCCAGTCAAAAGCTGATGAATCGGCTAGCTGGGTTTCTAAT AAGACAACGAATGATGGGCCAAGGAGATTTGTAGGAGCGAATAATGGTGGGTTTGAGAGGAGAGGGAGTTACGATACGTTATCGAGAGAAAGACATGGGT TTAGTGGTGGGGCTGCTGATTCAGATAATTGGGGGAGGAAAAAAGATGAGAGTTTTAACAGTGGCAGTGTTGGTGAGAGGCCGAAATTGAAGTTGCAGCC AAGAACTTTGCCTGTCAGTGATGGGAATGGGGCGGTAGAGAAGCCTAAAGGGTCAAACCCGTTTGGAGATGCGAGACCAAGAGAGGAGGTGTTGAAGGAG AAAGGGATGGATTATAAGGAGATTGATGAGAAGTTGGACTCTGTGAAAATTAGCAGTGAGAGAAGTAAGGATGTGGAGAGAAGCGATTCCTTTGGAAAAA GGGGATTTGGGATTGGTCGTGGAGGTTCAGGCAATGAGAGAAGTTGGAGGAAGCCTGATGTTGCTGATTCTGGTTCTCGTCCACAGAGTGCTGAGACAAC TGAGAATGGAAATAATGCTGAAGATGGGCTTGCTACCGAGGACGAAGTTGTTGAAGGAAACTGA
AA sequence Show only first row Show all	>Potri.009G130200.1 pacid=42772748 polypeptide=Potri.009G130200.1.p locus=Potri.009G130200 ID=Potri.009G130200.1.v4.1 annot-version=v4.1 MAATVSSPWSKPGAWALDAEEHEAELQQEHENSQQASTLAAQPLGGVAEFPSLAAAAATKQPKKKKNQTLSLAEFSNYSLAKSSHEPDLFNLPTRPRERS AEELDRARLGGGFKSYGLSYRNGGEESNSRWGGGGNGNSRVSNRESSKEFAPSRADEIDDWSKTKKSPAGNVYERRERERGSSFFDSQSKADESASWVSN KTTNDGPRRFVGANNGGFERRGSYDTLSRERHGFSGGAADSDNWGRKKDESFNSGSVGERPKLKLQPRTLPVSDGNGAVEKPKGSNPFGDARPREEVLKE KGMDYKEIDEKLDSVKISSERSKDVERSDSFGKRGFGIGRGGSGNERSWRKPDVADSGSRPQSAETTENGNNAEDGLATEDEVVEGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38710			glycine-rich protein (.1.2)		Potri.009G130200 [exp]	0	1
AT4G38710			glycine-rich protein (.1.2)		Potri.004G169100 [exp]	2.23	0.7713
AT3G58660			Ribosomal protein L1p/L10e fam...		Potri.012G145000 [exp]	3.60	0.8084
AT3G55340		PHIP1	phragmoplastin interacting pro...		Potri.010G209701 [exp]	6.48	0.7890
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	6.63	0.7745
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	7.21	0.7941
AT5G30490			unknown protein		Potri.010G151300 [exp]	9.16	0.7623
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.010G142400 [exp]	13.07	0.7229
AT5G58020			unknown protein		Potri.018G109800 [exp]	13.41	0.7685
AT4G32610			copper ion binding (.1)		Potri.006G246300 [exp]	13.85	0.7023
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Potri.003G098800 [exp]	14.07	0.7598

Compare expression of checked genes

Potri.009G130200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.