Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 489 / 1e-170 Amidase family protein (.1) AT5G07360 114 / 9e-27 Amidase family protein (.1.2) AT3G25660 101 / 1e-22 Amidase family protein (.1) AT5G64440 57 / 1e-08 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 50 / 2e-06 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G09420 45 / 0.0001 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G17970 43 / 0.0006 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169300 [exp] 747 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130500 [exp] 645 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171000 [exp] 540 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130700 [exp] 520 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 513 / 4e-179 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 426 / 5e-147 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.015G109400 [exp] 112 / 3e-26 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.018G086350 [exp] 100 / 3e-22 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.005G070300 [exp] 84 / 5e-17 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027852 [exp] 633 / 0 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10027853 [exp] 602 / 0 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10025066 [exp] 482 / 5e-167 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002805 [exp] 465 / 1e-161 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10034477 [exp] 135 / 5e-35 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10020781 [exp] 112 / 4e-26 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10032519 [exp] 109 / 4e-25 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10027854 [exp] 97 / 2e-24 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10007361 [exp] 105 / 4e-24 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10043019 [exp] 105 / 6e-24 AT5G07360 858 / 0.0 Amidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.009G130400.1 pacid=42772502 polypeptide=Potri.009G130400.1.p locus=Potri.009G130400 ID=Potri.009G130400.1.v4.1 annot-version=v4.1 ATGGACACAGTCAAAGGTTCACAATTCACAATCAAGGAAGCCACAATCCAAGAAACCCAACAAGCATTCACTGAAAACAAATTAACCTCAAAACAGTTAG TCAACTTCTACTTGAACCAAATCCAAGAACTGAATCCTCTACTTCACAGCGTGCTAGAAGTCAATCCAGACGCATTAGATCAAGCTGAAAAGGCTGATCA AGAAAGGGAAAGCAATCAGGGCCGGCGGTTCCTGGGGGACATGCATGGGATCCCAGTGCTGTTGAAGGACAACATAGCTACAAAAGATAAGTTGAGCACC ACTGGTGGGTCCCATGCCCTGTTGGAGTCCGAGGTTGCACGTGATGCTCACGTGGTGGAGAGATTGAGGAATGCTGGTGCTGTGATTTTAGGGAAGGCGA GTCTTAGTGAGTGGAGTCATTTTAGGTCTTATGGCATTCCTAGTGGTTGGTGTGCTAGAGGAGGTCAAGCTGTGAATCCATATGTGGAAGGGGGCGATCC ATGTGGATCAAGCAGTGGATCAGCAATATCTGTAGCTGCAAACATGGTGGCAGTATCACTGGGGACTGAAACGGATGGCTCTATCCTCTGCCCTTCAGAT CACAACTCAGTTGTTGGGCTCAAGCCAACTGTCGGACTCACCAGCCGCTCTGGTGTGATCCCAATTTCATCCCGCCAGGACTCAGTTGGGCCTATATGCA GGACAGTATCAGATGTTGTGTATTTGCTTGACGCAATTGGTGGTTTTGACCCAAGAGATTGCGAAGCAACGAAAGAAGCATCCGAGTTTATCCCTGCAGA TGGTTATAAAAAGTTTCTGAAAAAAGATGGTCTCAAAGGAAAGAGACTGGGAATAGTCAGAAATCCATTTGAGATATATTTCAAGGATCCAGTGATTGTA TCAACATTTGATCACCATCTGGAAGTATTGAGGCGAGGAGGTGCAACTGTGGTGGATAATCTTGAAATTGCAAACATTGATGTCATTATGGATCCCGATC AAAGTGGTGAAGATTTGGTGATGCTAGCTGAGTTCAAGGAAACCATCAATAAGTACTTAGAAGAGCTTGTCAAATCTCCTGTGAGATCACTGGCAGACAT TATAGCTTTCAACACCAATAATCCTGAACTGGAAAACCTGGATATATATGGTCAGGTACTACTTGTCAACTCGGAGAAGACAAATGGGCTCGGAGAGGAG GAGATGAAGGCAGTGAAGCATATGGAAAGTCTATCACAAGAAGGATTTGAAAAAATGATGAAGGAGAATGAGTTAGATGCCATGGTGACACTTGGTGCAG CTGCTTCTACTGTGCTAGCTATTGGAGGTTACCCTGCAATTACAGTTCCAGCAGGGTATGGCAGCAGTGGAATGCCATTTGGTATCTGTTTTGGGGGACT GAAAGGCATGGAGACGAAGCTGATTGAGATTGCTTATTCTTTTGAGCAGGCTACACTGTCTCGCAAGCCTCCTTGTCCTTCTCTTTGTACTTGA
AA sequence Show only first row Show all	>Potri.009G130400.1 pacid=42772502 polypeptide=Potri.009G130400.1.p locus=Potri.009G130400 ID=Potri.009G130400.1.v4.1 annot-version=v4.1 MDTVKGSQFTIKEATIQETQQAFTENKLTSKQLVNFYLNQIQELNPLLHSVLEVNPDALDQAEKADQERESNQGRRFLGDMHGIPVLLKDNIATKDKLST TGGSHALLESEVARDAHVVERLRNAGAVILGKASLSEWSHFRSYGIPSGWCARGGQAVNPYVEGGDPCGSSSGSAISVAANMVAVSLGTETDGSILCPSD HNSVVGLKPTVGLTSRSGVIPISSRQDSVGPICRTVSDVVYLLDAIGGFDPRDCEATKEASEFIPADGYKKFLKKDGLKGKRLGIVRNPFEIYFKDPVIV STFDHHLEVLRRGGATVVDNLEIANIDVIMDPDQSGEDLVMLAEFKETINKYLEELVKSPVRSLADIIAFNTNNPELENLDIYGQVLLVNSEKTNGLGEE EMKAVKHMESLSQEGFEKMMKENELDAMVTLGAAASTVLAIGGYPAITVPAGYGSSGMPFGICFGGLKGMETKLIEIAYSFEQATLSRKPPCPSLCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34880			Amidase family protein (.1)		Potri.009G130400 [exp]	0	1
AT3G20015			Eukaryotic aspartyl protease f...		Potri.007G106300 [exp]	10.04	0.7978
AT4G25250			Plant invertase/pectin methyle...		Potri.012G127400 [exp]	13.63	0.7827
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	14.07	0.7208
					Potri.005G084100 [exp]	19.49	0.6914
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	23.04	0.7802	Pt-CLB6.1
AT5G45490			P-loop containing nucleoside t...		Potri.011G040800 [exp]	24.39	0.7711
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Potri.018G091500 [exp]	26.03	0.6526
AT4G31980			unknown protein		Potri.003G208001 [exp]	29.93	0.6753
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Potri.017G010200 [exp]	34.64	0.6516	MPK6.2
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	35.41	0.7031

Compare expression of checked genes

Potri.009G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.