Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 500 / 2e-174 Amidase family protein (.1) AT5G07360 100 / 5e-22 Amidase family protein (.1.2) AT3G25660 92 / 2e-19 Amidase family protein (.1) AT5G64440 64 / 2e-10 ATFAAH fatty acid amide hydrolase (.1) AT5G09420 44 / 0.0002 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169300 [exp] 688 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 672 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.004G171000 [exp] 590 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130700 [exp] 583 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 550 / 0 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 487 / 2e-170 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.005G070300 [exp] 106 / 5e-24 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.015G109400 [exp] 105 / 5e-24 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.018G086350 [exp] 96 / 1e-20 AT3G25660 766 / 0.0 Amidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027852 [exp] 607 / 0 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10027853 [exp] 583 / 0 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10002805 [exp] 538 / 0 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10025066 [exp] 525 / 0 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002804 [exp] 302 / 7e-96 AT4G34880 257 / 2e-90 Amidase family protein (.1) Lus10034477 [exp] 139 / 3e-36 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10027854 [exp] 105 / 3e-27 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10020781 [exp] 109 / 6e-25 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 107 / 2e-24 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10032519 [exp] 103 / 2e-23 AT5G07360 847 / 0.0 Amidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.009G130500.1 pacid=42772345 polypeptide=Potri.009G130500.1.p locus=Potri.009G130500 ID=Potri.009G130500.1.v4.1 annot-version=v4.1 ATGGCGGTCAACCTCCCATCTTCTTCCCTTCTCCTACCATTGATCTTCCTCTTCTTAATATTCATCACAGTCAACGGCCAACATTTCACAATCCCAGAAT CAACCATAGAGGAAATCCAACAAGCCTTCGCAGAAAATAAACTGACATCAACACAACTCGTAGACTTCTACATAACCCAAATCAAAACCCTCAATCCCCT GCTTCACAGCATTATAGAAGTGAACCCAGATGCACGTGATCAAGCTAAAAATGCTGATGAAGAAAGGAGAGAAAATCAGGGCAGGAGAAGCTTAGGGGAC TTACATGGGATCCCAGTGTTGTTAAAGGACACGATTGGGACTAAAGATAAGTTGAACACATCAGCTGGATCCTACGCTTTGGTGGGTTCAGTGGTGGCCA GAGATGCAAGCGTTGTAGAGAAGTTGAGAAAGGCTGGTGCAGTTATAATGGGAAAAGCTAGTCTTAGTGAATGGTACAAGTTTCGTTCTTTAAGTCATGT ACCTAATGGTTGGTGTGCAAGATCTGGACAAGGAGTGAATCCTTACCTTGTAACAGGGGATCCATGTGGCTCAAGCAGTGGATCAGCAATTTCAGTAGCC GCAAACATGGTGGCAGTATCACTTGGAACTGAGACTCATAGTTCCATCATATGTCCCTCTGATCATAACTCTGTTGTAGGTCTCAAACCCACTGTTGGTC TCACTAGCCGTGCTGGTGTTATTCCAGTTGCGCCTAGCCTAGACACCATTGGGCCTGTAACCAGGACAGTGTCTGATGCAGTTCGAGTACTAGATGTAAT TGTGGGTTTTGATCCAAGAGATTATGAGGCAACACAAAGAGCAGCCAAGTTCATACCTGCTGGTGGTTACAAGCAATTCCTCAATCCAAACGGGCTCAAA GGAAAGATATTGGGCATAGTTAGGAACCCATTTTTGAAGTCGTTGAATGAATCTATATTTCCTATCTTTGAGCATCATCTGAACACATTAAGGGAAAGAG GTGCCACTGTAGTGGACAATCTTGAGATAGCGAACATAAACACTATTGTCGATCCATCGCGAAGCGGTGAACTAACACTAATGATGGCCGAGTTCAAACT CTCCTTAAATGATTACCTGAAAGATCTTATCACTTCTCCAGTCTGGTCACTTGCTGATATTATAGCCTTCAACAAAAATAACCCCGATCTAGAGAAGAAT AAAGAGTATGGTCAGGATACATTCATAGCAGCGGAGAAGACGAATGGCATTGGAGAGAAAGAAAGGAAAGCTATAGAGTTGATGGAAAAACTCTCGCAAA ATGGTTTTGAGAAACTGATGATGGAAAATAATTTGGATGCAATGGTGACACCAGGTTCAGGCGCCACATCCGTGCTGGCAATTGGTGGATACCCTGGGAT TACTGTCCCAGCTGGATATGATATCAATGGAATGCCATTTGGGATCTGTTTTGGTGGATTAAAAGATACTGAAATAAAGCTAATTGAGATTGCTTATGAC TTTGAGCAAGCTACCATGATGAGAAAGCCTCCTCTTCTTGAATCTTTTCAAATGACTCCAGAATTTCTATCTGGAAGTTTGTAA
AA sequence Show only first row Show all	>Potri.009G130500.1 pacid=42772345 polypeptide=Potri.009G130500.1.p locus=Potri.009G130500 ID=Potri.009G130500.1.v4.1 annot-version=v4.1 MAVNLPSSSLLLPLIFLFLIFITVNGQHFTIPESTIEEIQQAFAENKLTSTQLVDFYITQIKTLNPLLHSIIEVNPDARDQAKNADEERRENQGRRSLGD LHGIPVLLKDTIGTKDKLNTSAGSYALVGSVVARDASVVEKLRKAGAVIMGKASLSEWYKFRSLSHVPNGWCARSGQGVNPYLVTGDPCGSSSGSAISVA ANMVAVSLGTETHSSIICPSDHNSVVGLKPTVGLTSRAGVIPVAPSLDTIGPVTRTVSDAVRVLDVIVGFDPRDYEATQRAAKFIPAGGYKQFLNPNGLK GKILGIVRNPFLKSLNESIFPIFEHHLNTLRERGATVVDNLEIANINTIVDPSRSGELTLMMAEFKLSLNDYLKDLITSPVWSLADIIAFNKNNPDLEKN KEYGQDTFIAAEKTNGIGEKERKAIELMEKLSQNGFEKLMMENNLDAMVTPGSGATSVLAIGGYPGITVPAGYDINGMPFGICFGGLKDTEIKLIEIAYD FEQATMMRKPPLLESFQMTPEFLSGSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34880			Amidase family protein (.1)		Potri.009G130500 [exp]	0	1
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	6.00	0.7250
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Potri.014G083800 [exp]	9.79	0.6956
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	9.89	0.6968
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	10.58	0.7200
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	10.95	0.6665
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	13.41	0.6990	SMO1.2
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	13.96	0.6814	RHEL901,SDE3.1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G034200 [exp]	15.81	0.6564
AT5G57970			DNA glycosylase superfamily pr...		Potri.003G182300 [exp]	16.97	0.6693
AT1G13750			Purple acid phosphatases super...		Potri.010G158400 [exp]	18.97	0.7134

Compare expression of checked genes

Potri.009G130500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.