Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19360 277 / 7e-91 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G32360 143 / 2e-39 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 75 / 2e-15 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G68200 52 / 3e-07 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G66810 48 / 6e-06 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G12130 44 / 5e-05 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G47120 44 / 9e-05 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT5G06770 42 / 0.0002 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G12680 42 / 0.0007 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169500 [exp] 543 / 0 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 159 / 2e-45 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 156 / 2e-44 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 145 / 5e-41 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.001G013200 [exp] 62 / 1e-10 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.006G191900 [exp] 57 / 4e-09 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.016G046600 [exp] 56 / 8e-09 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 55 / 3e-08 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.004G095100 [exp] 55 / 4e-08 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043287 [exp] 388 / 5e-135 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 332 / 7e-114 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 148 / 7e-42 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 140 / 8e-39 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10021043 [exp] 59 / 9e-10 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10016272 [exp] 59 / 1e-09 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10004183 [exp] 58 / 5e-09 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10035256 [exp] 51 / 6e-07 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10034624 [exp] 51 / 7e-07 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10012017 [exp] 45 / 1e-05 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.009G130600.1 pacid=42771041 polypeptide=Potri.009G130600.1.p locus=Potri.009G130600 ID=Potri.009G130600.1.v4.1 annot-version=v4.1 ATGAGTTACCCTGATTCCCATGATTCTTTTATGTCACCACAGGCCTCATATCAAGCAGGCAGTGATGCTATTGGTGTGTGGCCTCAATTTGTAATGAATA ACATTGAGCAATTTGAACACCACCAACCACCTTATAAAAGGCCAAGAAACTCTGAGGATAACCCCAACCAATCCGTGAATTCTAGGACGCCACCAACAAA CAACCTTCCAGTCCACAAGGGAGCAACCAACATCTTTTTCAAGACAAGAGTATGTGCAAAGTTTAAGACTGGCACTTGTAGGAATGGCGAGAATTGCAAC TTTGCTCATGGAATGCAAGATTTGAGGCAGCCTCCTCCAAATTGGAAGGAACTGGTGGGTGTAAGTGTAAGTAGTGAAGAGGATAGGTCAACAGCGACCA ATTGGGAAGATGATCAGAGGATAATTCACAAGATGAAGCTGTGCAAGAAGTTTTATAATGGGGAAGAGTGTCCTTATGGTGATAGGTGTAATTTCCTTCA TGAGGATCCATCAAAGTTCAGGGAGGACACAGGGAGGTTCAGGGAGAGTTCTGCAATAAGTATTGGTACTACAGGGCAGGCGTTGGGCCATGGAAGTGGT GTGTTTAATGCTGCTGAAGTTAATAGGCCGGCAAACAATGCTGTTTCAGATGCTTCTCGATCAAATATAATAAAGCCTGTTTATTGGAAGACAAAATTGT GTACTAAGTGGGAGATCACAGGTCAATGCCCCTTTGGCGAGAAATGCCACTTTGCTCATGGGCTAGCAGAGTTACAAGCTCCTGGTGGACGCACTGAGGT GGAAGCAGGAAATGCAGGCTCTGTTTTGACTAAAGCACCACCACCTCTTCTTCCTAATAACGTGTCTCCAAGTATGACAGTGAATGTGCCTAGTTTAATT GAAGAGGAGCAAGGTAAGAAATGCTTATTAAAGTGGAAAGGACAGAAGAAAATAAATCGGATTTATGCTGACTGGCTTGATGATCTGCCATTAGTTCACA ACTTGACAAACCAAGTGCAGAGTTGA
AA sequence Show only first row Show all	>Potri.009G130600.1 pacid=42771041 polypeptide=Potri.009G130600.1.p locus=Potri.009G130600 ID=Potri.009G130600.1.v4.1 annot-version=v4.1 MSYPDSHDSFMSPQASYQAGSDAIGVWPQFVMNNIEQFEHHQPPYKRPRNSEDNPNQSVNSRTPPTNNLPVHKGATNIFFKTRVCAKFKTGTCRNGENCN FAHGMQDLRQPPPNWKELVGVSVSSEEDRSTATNWEDDQRIIHKMKLCKKFYNGEECPYGDRCNFLHEDPSKFREDTGRFRESSAISIGTTGQALGHGSG VFNAAEVNRPANNAVSDASRSNIIKPVYWKTKLCTKWEITGQCPFGEKCHFAHGLAELQAPGGRTEVEAGNAGSVLTKAPPPLLPNNVSPSMTVNVPSLI EEEQGKKCLLKWKGQKKINRIYADWLDDLPLVHNLTNQVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	0	1
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	2.64	0.8525
AT2G19540			Transducin family protein / WD...		Potri.007G094000 [exp]	5.29	0.8078
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	5.65	0.7695
AT5G41190			unknown protein		Potri.003G124700 [exp]	6.16	0.8409
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	7.54	0.8299
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Potri.014G067300 [exp]	9.48	0.6987	MAP1.3
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	12.04	0.7982
AT1G42440			unknown protein		Potri.005G250100 [exp]	12.40	0.7801
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.008G120100 [exp]	13.11	0.7031	ERF79
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	13.26	0.7620

Compare expression of checked genes

Potri.009G130600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.