Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 528 / 0 Amidase family protein (.1) AT5G07360 101 / 2e-22 Amidase family protein (.1.2) AT3G25660 97 / 4e-21 Amidase family protein (.1) AT5G64440 79 / 3e-15 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 51 / 1e-06 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G09420 42 / 0.0007 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G171000 [exp] 774 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 628 / 0 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 587 / 0 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.009G130500 [exp] 579 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G169300 [exp] 554 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 548 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.005G070300 [exp] 100 / 3e-22 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.015G109400 [exp] 100 / 4e-22 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.007G098600 [exp] 98 / 3e-21 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002805 [exp] 598 / 0 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10025066 [exp] 593 / 0 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10027852 [exp] 551 / 0 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10027853 [exp] 521 / 0 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10002804 [exp] 180 / 4e-44 AT4G34880 257 / 2e-90 Amidase family protein (.1) Lus10034477 [exp] 155 / 3e-42 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10027854 [exp] 120 / 5e-33 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10032519 [exp] 99 / 1e-21 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 93 / 1e-19 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10007361 [exp] 92 / 2e-19 AT3G25660 795 / 0.0 Amidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.009G130700.1 pacid=42772302 polypeptide=Potri.009G130700.1.p locus=Potri.009G130700 ID=Potri.009G130700.1.v4.1 annot-version=v4.1 ATGGCTATCAACACACCGCTGAGCTTCTCACTCCTTTCATCACTAACTTTCATTCTTTTGACAATATCAAGCCATGCATTCTCAATCGAGGAAGCAAGCA TATGTGATCTCCAGCTTGCTTTTAAGCAGAACCAACTCACGTCAAGGAAGCTAGTTGAGTTCTACATTGGAGAAATCAATAGACTGAACCCAATCCTTAA AGGAGTTATGGAAACAAGTCCTGATGCGCTCTTCCAAGCTGATAAGGCCGACTATGAGCGTAGGATTAAGGCACCAGGTTCATTGGCTGGCTTGCATGGC ATCCCTATCCTGCTCAAGGATAATATTGCAACCAAGGATAAGTTGAACACCACGGCTGGCTCTTTTGCACTGCTTGGATCAGTCGTGCCTCGTGATGCAG GCATCGTGGTGAAGTTAAGGAAAGCTGGAGCTATAATTCTTGGAAAGGCTAGCTTGAATGAGTGGGCTGGTTTCATGTCAGTCAAAGCTCCTAATGGCTT TAGTGCAAGAGGTGGCCAAGGAGAGAATCCTTATCTTCTATCAGCAAATCCTTGTGGATCAAGTAGTGGGTCAGCAATATCAGTAGCAGCGAATTTGGTG ACTGTGTCTCTAGGTACTGAGAATGATGGCTCCATCTTATGTCCATCAAATGCTAACTCGGTGGTGGGAATAAAACCAACAGTTGGTCTCACCAGTCGAG CTGGAGTAATCCCAATTTCTCTGAGACAAGACACTGTTGGACCTATCTGCAGGACGGTATCGGATGCTGTTTATGTTCTTGACGCCATTGTAGGAATTGA TTACCATGATCATGCAACGCAAGAAGCAGCGAAGTACATTCCACACGGTGGCTACAAACAGTTTCTCAAGCGTCATGCGCTCAAAGGCAAAAGACTTGGA ATCGTAAGGAATCCGTTCTTGAGTTCAGCCAGTGAATCTGAGAGTCAAGCTTTTGAGCATCATCTCCAAACACTAAGTCAAAGAGGTGCAGTTTTAGTAG ACCGCTTGGAAATAGCCAACATGGATACTATTTCCACTGGGACTGCCGAAGGAACGGCATTGCTGGCTGAATTCAAAATATCCTTGAATGCATACCTGAA AGAGCTGGTGGCTTCCCCAGTCCGAACATTAGCCGATGTTATAGCATTCAATCAGAAATTTGCAGATGTGGAAAATATCAAGGAATTTGGTCAAGACCTC TTTCTAGCAGCTCAAGCTACAAACGGAATTGGAAACAGAGAGAATGCTGCATTGTCAAATTTAGCAAAATTAACAAGAGATGGATTTCAGAAGTTGATGT GTGATTACAACCTAGATGCATTGGTAACTCCCGGAGCAGGTATAGCTCGTGTTCTTGCAATTGGTGGATTCCCTGGAATTAATGTTCCCGCAGGATATGA TGATTCAGGAGTACCTTTTGGCATCAACTTTGGAGGACTAAAGGGCTCAGAACCAAAACTGATTGAGATTGCATATGGCTTTGAGCAAGCAAGTAAAATA AGAAAGCCTCCTACATTCAAGGCTTTAAACTTCACAAGAATGCTTCTTTCAAGTTTAACTGATGTATGA
AA sequence Show only first row Show all	>Potri.009G130700.1 pacid=42772302 polypeptide=Potri.009G130700.1.p locus=Potri.009G130700 ID=Potri.009G130700.1.v4.1 annot-version=v4.1 MAINTPLSFSLLSSLTFILLTISSHAFSIEEASICDLQLAFKQNQLTSRKLVEFYIGEINRLNPILKGVMETSPDALFQADKADYERRIKAPGSLAGLHG IPILLKDNIATKDKLNTTAGSFALLGSVVPRDAGIVVKLRKAGAIILGKASLNEWAGFMSVKAPNGFSARGGQGENPYLLSANPCGSSSGSAISVAANLV TVSLGTENDGSILCPSNANSVVGIKPTVGLTSRAGVIPISLRQDTVGPICRTVSDAVYVLDAIVGIDYHDHATQEAAKYIPHGGYKQFLKRHALKGKRLG IVRNPFLSSASESESQAFEHHLQTLSQRGAVLVDRLEIANMDTISTGTAEGTALLAEFKISLNAYLKELVASPVRTLADVIAFNQKFADVENIKEFGQDL FLAAQATNGIGNRENAALSNLAKLTRDGFQKLMCDYNLDALVTPGAGIARVLAIGGFPGINVPAGYDDSGVPFGINFGGLKGSEPKLIEIAYGFEQASKI RKPPTFKALNFTRMLLSSLTDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34880			Amidase family protein (.1)		Potri.009G130700 [exp]	0	1
					Potri.005G047550 [exp]	4.00	0.7916
AT3G26840			Esterase/lipase/thioesterase f...		Potri.017G062200 [exp]	4.47	0.7812
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.008G164100 [exp]	5.19	0.8007
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.002G201600 [exp]	5.29	0.8497
AT5G03990			unknown protein		Potri.016G042400 [exp]	6.00	0.7610
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Potri.016G073000 [exp]	13.07	0.7006
AT2G21300			ATP binding microtubule motor ...		Potri.002G027600 [exp]	15.87	0.7696
					Potri.008G112166 [exp]	15.96	0.6812
					Potri.014G027950 [exp]	17.86	0.7583
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.007G094700 [exp]	19.39	0.7073

Compare expression of checked genes

Potri.009G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.