Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16620 1112 / 0 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT2G16640 1098 / 0 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT4G02510 652 / 0 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT5G20300 278 / 3e-79 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT5G05000 124 / 1e-30 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 120 / 9e-30 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 89 / 1e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02482 69 / 3e-13 chloroplast outer envelope GTP-binding protein, putative (.1) AT1G33950 48 / 3e-05 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT4G09930 44 / 0.0006 Avirulence induced gene (AIG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131200 [exp] 1299 / 0 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 1295 / 0 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.010G014300 [exp] 612 / 0 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 603 / 0 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 583 / 0 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.006G063500 [exp] 282 / 1e-80 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 271 / 4e-77 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.002G183400 [exp] 125 / 2e-31 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.014G109400 [exp] 125 / 2e-31 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005063 [exp] 1119 / 0 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10006048 [exp] 640 / 0 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10027835 [exp] 572 / 0 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10043414 [exp] 329 / 3e-99 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10028706 [exp] 335 / 7e-99 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10034170 [exp] 320 / 8e-94 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10028707 [exp] 296 / 1e-91 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 268 / 3e-76 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 265 / 4e-75 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10004619 [exp] 186 / 1e-52 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF04548 [poplar] [flax] AIG1 AIG1 family CL0023 [poplar] [flax] PF11886 [poplar] [flax] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Potri.009G131300.1 pacid=42772438 polypeptide=Potri.009G131300.1.p locus=Potri.009G131300 ID=Potri.009G131300.1.v4.1 annot-version=v4.1 ATGGAAAATGGAATTGATAGAGTTGTCGATGCGACGCAATTAGAAAACAACATCAATGTTAACACTGAAGTTTCTAGGGATAAGGTGGAGGATAAATATG AGGTTTTGGGTGGCGCGGTGGAGGGAACAAATGAGTTGTTGGGGGATAAGGTAGAGGAGAAGGTTGCGGTGGCGTCCAGTGAATCGAAGGATTTGGAAGA TGAGGTTTTTGTGGAGGCACTTGAGTCAACCGAGAAATTGCATGAAGAGGGAGTGAAGTTTGAGTCAGATGGTGGTGTTGAGAGTGTTGGTGACTCGAGT TTGGTGGTTGGGAATGCAAATTTGGATGTGGGAAATGAAATGGAGAAATTTGAGGCACATGAGTCAGAAGGTGGTGATTCTGGTTCAGTAGTTGTCATTG AGAAATCAGATGTAGGAAGTATGATGGACAAATTTGAAGAGCCGGTTTTTGTTCCTGCTGAGCCTGGGAATCCCGAGGGGTTGACTGAGGTGGTTGGTGA AGAGAAGGTGGTGGATTCGGTAGGTGGAGAGAGTGTCCGTAAGATTGACGAGGGAGGGACTGTTGTGGAAGTGGAGGGCAGTGTGTTGAATGGAGGGGAG GTTGTTTCAGTTGAGCTTCAAGACAGAAAAGGTGAAGGACTTCATGAGAATCCGGTGAAAGTTGATACAGAAGACCAGGATGACAAAAGTGGGGAATTGA TAGGGGATTCAGCTGGCCTTGATTCGGAGGATGGGATTCACAAGGGTGGGCATCCAAAGGGCATTTCAGCAACTGTTGATACAGAACACGGAGATACCAG CAATGGAGACTTGAAAGATACTATAGCTTCAGTGGATCCAGAGCATCATGAGGAAACTCCTGAACTGACAGCTGCTTCAGCTGTCCCACATACAGCCCTG GAAGAATCAACGGTGGTAGCGGAAACCGGAAGCTTAAATTCTTTAGATAAGTTTGTGAATGAGAAAAATGAAGACATTCAGGCAGATACTGCTAATTTGA GAGCAGAGGATAACAAGGATTCTGAACCAGAGCATGCTGCTGAAAAAGGTAATGATGCTGGCCAGAACAATATTGTGTCTGGGCACCCTGAAAGGATTGC AGAAACATATCCAGAGAAGCAAAACACTCCAGTAAATAAAGAAGGTGAAAGGCACCCTGAACCTAAGCTTGCCTCTTTATCTGGAAAATCTTTGCGTCCT CCCTCCCTTTCCCATCCAGCTGGCCTTGGGCGTGCTGCCCCACTCCTGGAACCTGCAACTAGGGCAATGCAGCAGTTGCGTGCTAATGGAGCCATGTCTC ATATGCGCCCTCAACAGCTTGATGACCCTACTGATGGGGAGTCAGAGGAGCACGATGAGACTCATGAAAAACTCAAGATGATTAGGGTGAAATTTTTGCG TCTAGTGCATAGGCTTGGATTGGCTCCCAATGAAACTGTTGTGGCACAGGTTTTATACAGATTGGGAATCGTTGAGCAGCTGCGAGGGAGAAATCGGGGT CGCATTGGCACCTTAAGTTTTGATCCTGCAAGTGCCATGGCAGGACAGCTTGAGGCAGATGGGCAGGAACCCCTTGATTTCTCCTGCACAATTATGGTTC TTGGAAAGACTGGGGTTGGAAAAAGTGCCACTATCAATTCAATATTTGATGAAGCAAAGCTCCCCACCAATGCTTTTCAATCTGGTACAAAAATGGTTCA GGATGTTGTGGGAACTGTTCAGGGGATCAAGTTACGGGTCATTGACACACCAGGCCTCCTTCCTTCCGGGTCTGACCAGCGACAGAATGAGAAAATCCTT CTCTCAGTGAAAAACTTTATCAAGAAAACTCCTCCAGATATTGTGTTGTATTTTGATAGGTTGGACATGCAGAGCAAGGATTTTGGTGATCTGCCCCTGT TGCGAACCGTCACCAAGATATTCGGTCCATCTATATGGCAAAATGCAATTGTTGTCCTCAGTCATGCTGCTTCTGCTCCACCTGATAGTCCACAAGGTAC CGTTTCAAGTTATGAAATGTTTGTAACTCAACGTTCTCATGTTGTTCAACAAACAATTCGTCAGGCAGCAGGTGATATGTGGCTTGTAAATCCCGTTTCA TTAGTTGAGAATCACTCTGCGTGTAGAAGAAATAGGGCAGGGCATAGAGTGTTGCCTAATGGTCAGGTTTGGAAGCCTCAATTGTTGCTACTTTCCTTTG CATCAAAAATCCTCGCTGAAGCAAACGCTATATTGAAGGTGCAAGATGGTCCACCTAGGAAGCAATTTGCAACTCGGTCAAGAGCTCCTCCTTTACCATA CCTGCTGTCATCTCTTCTCCGGTCAAGACCACAAGTTAAGCTACCTGAGGAACAGTTTGGTGATGAGGATGGTTTAGATGATGATTTGGACGAGTCATTG GATTCTGAGGATGAGTCTGAATATGATGATTTACCACCATTTAAAAGTTTAACAAAAGCCCAGGTGGCAAAGCTTACTAAAGCTCAGAAGAATGCATATT TTGATGAGTTAGAGTACAGGGAGAAACTTTTTATGAAGAAACAGTTGAAGGAAGAGAAAAGGCAACAAAGGATGATGAAGAAAACTGCAGTGGCAACCAA TCCTCTGCCTGGTGACTACAGTGAAAATGCAGAAGAAGAAAGTGAAGGGCCTGCATCTGTGCCCGTTCCCATGCCAGATTTATCCTTACCTGCTTCTTTT GACTCTGATAATCCTTCCCACCGGTACCGTTATCTTGATAACTCCAATCAGTGGCTTGTAAGGCCAGTTCTTGATACACATGGTTGGGATCATGATGTTG GCTATGAAGGTATAAATGTGGAGAGATTATTTGTAGTTAAAGACAAGATTCCTGTATCCTTTTCTGGCCAGGTAACGAAGGACAAGAAGGATGCCAATGT TCAAATGGAATTAGCAAGTTCTATAAAGCATGGGGAAGGGAAATCAACTTCACTAGGTTTTGATATGCAGACTTTAGGGAAGGACTTGGGCTATACTTTA CACAGTGAGACAAGGTTCATTAATTTCAGGAAGAACAAGGCAACTGCTGGTCTTTCGGTTACTCTATTGGGTGATGCCTTATCAGCTGGAGTGAAAGTTG AGGACAAGTTGATTGCTAATAAGCGGTTCCAAATGGTCATGTCTGGTGGTGCAATGACTGGTCGTGGTGATGTAGCATATGGTGGTAGTCTGGAGGCCCA ACTGAGAGATGAAGATTATCCCCTGGGTCGTTCGCTATCCACTCTTGGACTCTCTGTTGTAGATTGGCATGGAGTTCTAGCAATTGGTTGCAATATACAA TCTCAGGTTCCTATTGGAAGGTCTACAAACTTGATTGCCCGTGCCAATTTGAATAACAAGGGTGCAGGACAACTCAGTATTCGCATAAATAGTTCAGAAC ACCTCCAAATAGCTTTGGCAGGTCTCATTCCTCTATTGAGGAAGCTTTTTGATTATCATGAAGAAATGCAGCTTGGACAATGA
AA sequence Show only first row Show all	>Potri.009G131300.1 pacid=42772438 polypeptide=Potri.009G131300.1.p locus=Potri.009G131300 ID=Potri.009G131300.1.v4.1 annot-version=v4.1 MENGIDRVVDATQLENNINVNTEVSRDKVEDKYEVLGGAVEGTNELLGDKVEEKVAVASSESKDLEDEVFVEALESTEKLHEEGVKFESDGGVESVGDSS LVVGNANLDVGNEMEKFEAHESEGGDSGSVVVIEKSDVGSMMDKFEEPVFVPAEPGNPEGLTEVVGEEKVVDSVGGESVRKIDEGGTVVEVEGSVLNGGE VVSVELQDRKGEGLHENPVKVDTEDQDDKSGELIGDSAGLDSEDGIHKGGHPKGISATVDTEHGDTSNGDLKDTIASVDPEHHEETPELTAASAVPHTAL EESTVVAETGSLNSLDKFVNEKNEDIQADTANLRAEDNKDSEPEHAAEKGNDAGQNNIVSGHPERIAETYPEKQNTPVNKEGERHPEPKLASLSGKSLRP PSLSHPAGLGRAAPLLEPATRAMQQLRANGAMSHMRPQQLDDPTDGESEEHDETHEKLKMIRVKFLRLVHRLGLAPNETVVAQVLYRLGIVEQLRGRNRG RIGTLSFDPASAMAGQLEADGQEPLDFSCTIMVLGKTGVGKSATINSIFDEAKLPTNAFQSGTKMVQDVVGTVQGIKLRVIDTPGLLPSGSDQRQNEKIL LSVKNFIKKTPPDIVLYFDRLDMQSKDFGDLPLLRTVTKIFGPSIWQNAIVVLSHAASAPPDSPQGTVSSYEMFVTQRSHVVQQTIRQAAGDMWLVNPVS LVENHSACRRNRAGHRVLPNGQVWKPQLLLLSFASKILAEANAILKVQDGPPRKQFATRSRAPPLPYLLSSLLRSRPQVKLPEEQFGDEDGLDDDLDESL DSEDESEYDDLPPFKSLTKAQVAKLTKAQKNAYFDELEYREKLFMKKQLKEEKRQQRMMKKTAVATNPLPGDYSENAEEESEGPASVPVPMPDLSLPASF DSDNPSHRYRYLDNSNQWLVRPVLDTHGWDHDVGYEGINVERLFVVKDKIPVSFSGQVTKDKKDANVQMELASSIKHGEGKSTSLGFDMQTLGKDLGYTL HSETRFINFRKNKATAGLSVTLLGDALSAGVKVEDKLIANKRFQMVMSGGAMTGRGDVAYGGSLEAQLRDEDYPLGRSLSTLGLSVVDWHGVLAIGCNIQ SQVPIGRSTNLIARANLNNKGAGQLSIRINSSEHLQIALAGLIPLLRKLFDYHEEMQLGQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	0	1
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	3.16	0.9651
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	3.46	0.9770
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Potri.014G166800 [exp]	4.12	0.9620	APG1.2
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	4.24	0.9654
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	4.89	0.9733	RNP1.2
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	6.48	0.9710
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	7.54	0.9728	Pt-SIGB.2
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	9.16	0.9726
AT4G15545			unknown protein		Potri.010G027400 [exp]	10.09	0.9564
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	10.72	0.9603

Compare expression of checked genes

Potri.009G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.