Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SEN1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60230 289 / 2e-99 ATSEN2, SEN2 splicing endonuclease 2 (.1.2) AT3G45590 274 / 1e-93 ATSEN1 splicing endonuclease 1 (.1.2) AT3G45577 94 / 3e-24 tRNA-intron endonucleases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083401 [exp] 196 / 2e-64 AT5G60230 141 / 4e-43 splicing endonuclease 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036866 [exp] 289 / 5e-99 AT5G60230 248 / 2e-82 splicing endonuclease 2 (.1.2) Lus10006218 [exp] 292 / 2e-96 AT5G60230 251 / 4e-80 splicing endonuclease 2 (.1.2) Lus10019074 [exp] 138 / 2e-41 AT5G60230 133 / 1e-39 splicing endonuclease 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [poplar] [flax] PDDEXK PF01974 [poplar] [flax] tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain CL0476 [poplar] [flax] tRNA-IECD_N PF02778 [poplar] [flax] tRNA_int_endo_N tRNA intron endonuclease, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G131500.1 pacid=42772143 polypeptide=Potri.009G131500.1.p locus=Potri.009G131500 ID=Potri.009G131500.1.v4.1 annot-version=v4.1 ATGGGGCCAAGATGGAAAGGAAAAGGAGCAGAAGCTAAAGCACTAGCAGATCCCATGTCAGAAATAGTCTCACAGCTTCAATCTTCTCTTCTTCAGTCAA ATGCATGTGCATCACTCTCAGGTTGTAGTGTGCTTCTTGCAGTGGAAACAGAACAGACTGAGCTTCTCACACGGGCATGTTTCGGTAAACCCATTATCAC AGCTGAGAAAGAAAAGCAATGGTTTCAGTTGGGTTTGGAGGAAGCATTTTATTTGTGTTATTCTTTAAAATGTTTAAAGATTGCTGGTGAAGATAATTTT GTTAAAAATGATTTAGATTTGTGGTTGTATATGAAATTGAAAAAGGAAAAATTCCCGGATTTTTATAAGGCGTATTCTCATCTTCGTATGAAAAATTGGG TTCTCAGGCCAGGATTACAGTATGGCGTGGATTTTGTTGCTTACCAGCATCATCCATCTTTGGTACATTCAGAATATGCTGTGATTGTTTTATCAGAAGG GGATACTGGGAGATTGAGGGTGTGGTCTGATTTCCACTGCACTATTAGACTTTGTGGAAGTGTTGCAAAAACGTTGTTAATTCTGAATGTTGACAAAAAT GGCCACGGTGCTATCTCTCCATCTTGTTTGGAGAGATACTCTGTTGAGGAGTGCACAATCACGAGATGGAGTCCAGAACAAAGCCGTGATGATAAGAAAG CCTCATAA
AA sequence Show only first row Show all	>Potri.009G131500.1 pacid=42772143 polypeptide=Potri.009G131500.1.p locus=Potri.009G131500 ID=Potri.009G131500.1.v4.1 annot-version=v4.1 MGPRWKGKGAEAKALADPMSEIVSQLQSSLLQSNACASLSGCSVLLAVETEQTELLTRACFGKPIITAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNF VKNDLDLWLYMKLKKEKFPDFYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIVLSEGDTGRLRVWSDFHCTIRLCGSVAKTLLILNVDKN GHGAISPSCLERYSVEECTITRWSPEQSRDDKKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.009G131500 [exp]	0	1	Pt-SEN1.2
AT2G23090			Uncharacterised protein family...		Potri.001G296600 [exp]	1.00	0.8720
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.010G031900 [exp]	3.46	0.8245	ECR1.2
AT5G07900			Mitochondrial transcription te...		Potri.004G012900 [exp]	3.74	0.8097
AT5G63690			Nucleic acid-binding, OB-fold-...		Potri.014G083500 [exp]	4.24	0.7992
AT1G20950			Phosphofructokinase family pro...		Potri.006G024500 [exp]	5.47	0.8412
AT2G30000			PHF5-like protein (.1)		Potri.001G277700 [exp]	7.74	0.8136
AT2G24390			AIG2-like (avirulence induced ...		Potri.006G278900 [exp]	8.83	0.8263
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050400 [exp]	8.94	0.7779
AT4G19140			unknown protein		Potri.001G130900 [exp]	9.21	0.8221
AT4G40042			Microsomal signal peptidase 12...		Potri.010G059300 [exp]	9.64	0.7398

Compare expression of checked genes

Potri.009G131500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.