Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38690 544 / 0 PLC-like phosphodiesterases superfamily protein (.1) AT4G34920 483 / 1e-173 PLC-like phosphodiesterases superfamily protein (.1) AT4G34930 432 / 3e-152 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172000 [exp] 618 / 0 AT4G38690 558 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034483 [exp] 521 / 0 AT4G38690 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10025062 [exp] 510 / 0 AT4G38690 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF00388 [poplar] [flax] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain
Representative CDS sequence Show only first row Show all	>Potri.009G131600.1 pacid=42772122 polypeptide=Potri.009G131600.1.p locus=Potri.009G131600 ID=Potri.009G131600.1.v4.1 annot-version=v4.1 ATGGGTTCTCAGATCTCTAAACAGATTGAAAGGCGTAAAGAAATCTCAACTGAGAAGAAGGTTTTGGTTGATCTTGAGGAAAGCTCTGGAGAAACATATC CAGGTTCTGATTATCGTCCATCAGACGGGAAGAATTGGATGGCTGGGTTCAACCCTGAGAAACTTCACATAAACCAAATTGTATGGCCTGGAACCCATGA TTCTGCTTCTAATAGGATTGGCATCCCATTGATCACTCGTCCTTTCGCTCAATGTCAGTCTTTGTCCATCTACCGTCAGCTTTGTGTAGGCACCAGAGTT TTTGATATTCGGGTTCAGGAAGACCGTCGGGTCTGCCATGGAATCCTGACAACATATAGTGTTGATGTTGTTATTCGAGACCTCAAGAAATTCTTGTTAG AAACTGAGTCAGAGATCGTAATTCTTGAGGTCAGGACGGAGTTTGGCCATGAGGATCCTCCAGAGTTTGACAAGTACTTGGAGGAACAGCTTGGAGAATA CCTGATCCATCAGGACGATAGTGTTTTTGGCAAAACAATTGCGGAATTGTTACCGAAGAGGGTAATCTGTGTATGGAAGCCAAGGAAATCACCAGCTCCA AAACATGGAAGCCCGTTGTGGAGTGCCGGTTATTTGAAAGATAATTGGATCGACACAGATTTGCCATCAACAAAATTTGAAAGCAACATGAAGTATTTGG GTGAACAGCCACCGGTTTCGTCAAGGAAATACTTTTACAGAGTGGAGAATACTGTTACACCACAAGCAGATAACCCAATTGTATGTGTTAAACCTGTGAC CAACCGGATTCATGGATATGCTAGGTTGTTCATAACACAGTGTTTCTCAAGGGGATGTGCTGATAAGTTGCAGATCTTCTCCACAGATTTTATTGATGAG GATTTTGTTGATGCATGTGTTGGATTGACTCGGGCAAGGGTTGAAGGGAAGGCTTAA
AA sequence Show only first row Show all	>Potri.009G131600.1 pacid=42772122 polypeptide=Potri.009G131600.1.p locus=Potri.009G131600 ID=Potri.009G131600.1.v4.1 annot-version=v4.1 MGSQISKQIERRKEISTEKKVLVDLEESSGETYPGSDYRPSDGKNWMAGFNPEKLHINQIVWPGTHDSASNRIGIPLITRPFAQCQSLSIYRQLCVGTRV FDIRVQEDRRVCHGILTTYSVDVVIRDLKKFLLETESEIVILEVRTEFGHEDPPEFDKYLEEQLGEYLIHQDDSVFGKTIAELLPKRVICVWKPRKSPAP KHGSPLWSAGYLKDNWIDTDLPSTKFESNMKYLGEQPPVSSRKYFYRVENTVTPQADNPIVCVKPVTNRIHGYARLFITQCFSRGCADKLQIFSTDFIDE DFVDACVGLTRARVEGKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38690			PLC-like phosphodiesterases su...		Potri.009G131600 [exp]	0	1
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	2.44	0.7632
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	8.36	0.7246
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.003G130301 [exp]	10.86	0.7591
AT2G23780			RING/U-box superfamily protein...		Potri.005G127900 [exp]	11.22	0.7303
AT2G34580			unknown protein		Potri.004G132600 [exp]	11.35	0.7533
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	12.16	0.7382
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	15.09	0.7087
					Potri.010G139550 [exp]	23.45	0.7373
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Potri.014G075800 [exp]	24.37	0.6991
AT5G07910			Leucine-rich repeat (LRR) fami...		Potri.015G048800 [exp]	25.61	0.7023

Compare expression of checked genes

Potri.009G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.