Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34940 986 / 0 ARO1 armadillo repeat only 1 (.1) AT5G66200 843 / 0 ARO2 armadillo repeat only 2 (.1) AT4G36030 756 / 0 ARO3 armadillo repeat only 3 (.1) AT3G26600 192 / 7e-53 ARO4 armadillo repeat only 4 (.1) AT1G44120 45 / 0.0001 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1) AT1G77460 44 / 0.0004 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172500 [exp] 1163 / 0 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.005G113000 [exp] 913 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.015G082800 [exp] 202 / 1e-56 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.010G045500 [exp] 199 / 2e-55 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.014G158700 [exp] 44 / 0.0003 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025059 [exp] 958 / 0 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10041905 [exp] 848 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10028452 [exp] 840 / 0 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10027837 [exp] 532 / 0 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 391 / 4e-133 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10037086 [exp] 332 / 3e-109 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10005065 [exp] 223 / 1e-69 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10036897 [exp] 211 / 1e-60 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10004620 [exp] 193 / 5e-53 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10026695 [exp] 192 / 8e-53 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.009G131900.1 pacid=42771514 polypeptide=Potri.009G131900.1.p locus=Potri.009G131900 ID=Potri.009G131900.1.v4.1 annot-version=v4.1 ATGGCGGACATTGTGAAAGAGATCCTGGCAAGGCCAATACAATTAGCAGACCAAGTGACAAAATTGGCAGATGAGGCACAAACTTTCAAACAAGATTGTC TAGAACTCAAAGCCAAAACAGAGAAGCTAGCAGGGCTTTTACGCCAAGCCGCTCGTGCCAGCAATGATCTTTATGAACGTCCAACAAGGCGAATCATCGA TGGCACAGAACAAGTGCTTGACAAGGCCCTCGCTCTTGTTGTCAAATGCCGCGCCAGCAACATAATGATAAGAATGTTCACGATCAGCCCTGCTGCCGCA TTTCGAAAAATCTCGATGCAGCTAGAGAATTCAATAGGAGATGTTTCTTGGCTCTTACGTGTATCAGCTTCCGCTGCTGATCGCGATGATGAGTATTTAG GCCTGCCTCCTATTGCTGCCAATGAGCCAATTCTGTGTCTTATATGGGAACAAGTTGCAATACTTTTTACGGGGAGCTTAGAAGATAGATCGGATGCTGC AGCTTCATTGGTTTCTTTGGCTAGAGATAATGACAGGTATGGAAAGTTGATTATCGAGGAAGGTGGAGTTGCACCATTGTTAAAGTTGGCTAAAGAAGGC AAAATGGAAGGTCAAGAAAATGCTGCTAGGGCTATTGGGCTTTTAGGGCGTGATCCAGAAAGCGTCGAACAGATTGTGAATGCTGGGGTTTGCACTGTGT TTGCGAAAATCCTCAAAGAAGGCCACATGCAAGTTCAGTGTGTGGTGGCTTGGGCTGTTTCTGAATTGGCTGCACATCATCCGAAATGTCAAGACCATTT TGCGCAGAACAACACGATTCGGTTTCTTGTCAGTCATCTTGCGTTTGAGACGATCCAAGAACATAGTAAGTACTTAATTGCAATCAAGCATAATATGTCG ATTCATTCAGCAGTGATGGCCAGTAATAGTACTAGTCCTGATGAAGATGAACCAGCAACAAAAAGTCATCCTCCAGTGGATAATAAAAATCCTAGCCAGA TGCACAGTGTGGTGACCAATACTATGGCAATGAGAAGTCAGACACTAAGCAATACCCAGCCAACACAAACCCAAACCCAAACTCAAAACCAAAACCTCTC AACACATCACCCCAACTATAATCATCCAAACCTTGCAAAAGGAAACCACAATATTCCGAAACAACAGCATAATCACCACGTGTCTTTGGCCGGGACTAGC ATCAAAGGAAGGGAATTTGAAGATCCTGCTACAAAAGCACAGATGAAGGCAATGGCAGCAAGAGCACTTTGGCAACTAGCAAGGGGAAATGTCGCCATAT GCCGTACCATCACAGAGTCTAGAGCGCTTTTATGCTTTGCAGTTTTGTTAGAGAAAGGTCACGACGAAGTTCAATCCTATTCAGCAATGGCATTGATGGA AATCACAGCGGTAGCTGAACAAAATTCTGACTTGAGACGCTCTTCGTTCAAACCTACATCCCCTGCGGCCAAAGCAGTGGTCGACCAATTACTAAAAGTA GTTGAGAAAGCAGACTCGGACCTCCTCACACCATGCGTCCAGGCTATTGGCAACTTGTCAAGGACTTTTAGAGCAACAGAAACTAGGATGATTGGTCCAT TGGTGAAGCTATTGGATGAAAGGGAACCTGAGGTTACTATGGAGGCAGTAATTGCCCTCAACAAGTTCGCGTCGTCAGATAATTTCCTATGTGTGACTCA CTCCAAGGCTATTATTGCTGCAGGAGGTGCCAAACACCTAATTCAACTTGTTTACTTCGGTGAACAAATGGTTCAAATTCCCTCTTTGATTCTCCTAAGC TTCATTTCATTGCATTGCCCTGACAGTGAGATTCTTGCAAATGAAGAGGTCCTTATTGTGCTAGAGTGGTCAACAAAGCAGGCTCATTTGATAGGAGAGC CCGAAATCGAGTCTTTGTTGCCGGAAGCAAAGAGTAGATTGGAACTGTATCAATCAAGAGGATCGAGAGGATTCCATTAA
AA sequence Show only first row Show all	>Potri.009G131900.1 pacid=42771514 polypeptide=Potri.009G131900.1.p locus=Potri.009G131900 ID=Potri.009G131900.1.v4.1 annot-version=v4.1 MADIVKEILARPIQLADQVTKLADEAQTFKQDCLELKAKTEKLAGLLRQAARASNDLYERPTRRIIDGTEQVLDKALALVVKCRASNIMIRMFTISPAAA FRKISMQLENSIGDVSWLLRVSASAADRDDEYLGLPPIAANEPILCLIWEQVAILFTGSLEDRSDAAASLVSLARDNDRYGKLIIEEGGVAPLLKLAKEG KMEGQENAARAIGLLGRDPESVEQIVNAGVCTVFAKILKEGHMQVQCVVAWAVSELAAHHPKCQDHFAQNNTIRFLVSHLAFETIQEHSKYLIAIKHNMS IHSAVMASNSTSPDEDEPATKSHPPVDNKNPSQMHSVVTNTMAMRSQTLSNTQPTQTQTQTQNQNLSTHHPNYNHPNLAKGNHNIPKQQHNHHVSLAGTS IKGREFEDPATKAQMKAMAARALWQLARGNVAICRTITESRALLCFAVLLEKGHDEVQSYSAMALMEITAVAEQNSDLRRSSFKPTSPAAKAVVDQLLKV VEKADSDLLTPCVQAIGNLSRTFRATETRMIGPLVKLLDEREPEVTMEAVIALNKFASSDNFLCVTHSKAIIAAGGAKHLIQLVYFGEQMVQIPSLILLS FISLHCPDSEILANEEVLIVLEWSTKQAHLIGEPEIESLLPEAKSRLELYQSRGSRGFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Potri.009G131900 [exp]	0	1
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.002G045800 [exp]	2.82	0.6976
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.008G110500 [exp]	11.48	0.6969
AT5G54830			DOMON domain-containing protei...		Potri.018G021000 [exp]	15.49	0.6269
AT5G65290			LMBR1-like membrane protein (....		Potri.007G096900 [exp]	17.23	0.6373
AT1G23050			hydroxyproline-rich glycoprote...		Potri.008G129200 [exp]	19.59	0.6049
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	20.97	0.6632
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	24.04	0.6220
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	24.08	0.6811
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Potri.015G063100 [exp]	32.44	0.6346
AT5G01970			unknown protein		Potri.006G111900 [exp]	36.49	0.6501

Compare expression of checked genes

Potri.009G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.