Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21060 103 / 2e-27 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT2G17870 105 / 5e-27 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT4G36020 103 / 1e-26 CSDP1 cold shock domain protein 1 (.1) AT4G38680 91 / 1e-22 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172600 [exp] 146 / 5e-44 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.005G174300 [exp] 100 / 6e-26 AT2G17870 92 / 1e-22 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.002G086900 [exp] 98 / 2e-25 AT2G17870 89 / 2e-21 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G112800 [exp] 83 / 3e-19 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 81 / 2e-18 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027839 [exp] 122 / 4e-35 AT2G21060 110 / 6e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10005066 [exp] 122 / 5e-35 AT2G17870 122 / 1e-35 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Lus10025058 [exp] 113 / 2e-32 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10028073 [exp] 97 / 4e-25 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10041902 [exp] 90 / 1e-21 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028449 [exp] 90 / 1e-21 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10025623 [exp] 87 / 2e-21 ND 81 / 8e-20 Lus10034487 [exp] 83 / 6e-20 AT2G21060 110 / 7e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0021 [poplar] [flax] OB PF00313 [poplar] [flax] CSD 'Cold-shock' DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G132000.2 pacid=42771227 polypeptide=Potri.009G132000.2.p locus=Potri.009G132000 ID=Potri.009G132000.2.v4.1 annot-version=v4.1 ATGAGCGATCAGAGGCAAACAGGGAAGGTTAAATGGTTTAGTGACCAAAAGGGGTTCGGTTTCATAACCCCTGATGATGGCGGTGATGATCTATTTGTTC ACCAATCTTCCATCAAATCTGAAGGCTATCGCAGCCTTGGAGACGGCGAAGAGGTTGAGTTTGAGATTGAAAACTCAGACGATGGCCGTACTAAGGCTGC TAATGTCACTGCTCCTGGTGGGAACCCAGTTCAGGGCATCCGATCCAGTGGTGGATATGGTGGTGGTGGTGGTGGTGGTGGGTATGGAGGCGGAGGCGGC GGCCGCGGAGGACGAGGTGGTGGAGGCTACGGAGGTAGCGGCGGGTATGGGGGTGGTAGCGGCGGGTATGGGGGTGGAGGTTATGGCGGCGGTCGGAGAG GAGGTGGTGGTGGAGGATACGGAGGGAGTGGTGGTGGTGGTGGGTATGGCGGAGGTGGCGGTGGAGGTTGTTATAGTTGCGGGGAGTCGGGGCATATGGC CAGGGACTGTCCACAAGGTGGCGGTGGCGGTGGAGGTGGTGGAAGGTATGGTGGTGGAAGCGGCGGTGGAGGAGGTGGAGGAGGGTGTTACAACTGTGGC GGTACTGGCCATTTTGCCAGGGAGTGTCCTAATAGTGGACGTTGA
AA sequence Show only first row Show all	>Potri.009G132000.2 pacid=42771227 polypeptide=Potri.009G132000.2.p locus=Potri.009G132000 ID=Potri.009G132000.2.v4.1 annot-version=v4.1 MSDQRQTGKVKWFSDQKGFGFITPDDGGDDLFVHQSSIKSEGYRSLGDGEEVEFEIENSDDGRTKAANVTAPGGNPVQGIRSSGGYGGGGGGGGYGGGGG GRGGRGGGGYGGSGGYGGGSGGYGGGGYGGGRRGGGGGGYGGSGGGGGYGGGGGGGCYSCGESGHMARDCPQGGGGGGGGGRYGGGSGGGGGGGGCYNCG GTGHFARECPNSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.009G132000 [exp]	0	1
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.004G172600 [exp]	1.41	0.8389	Pt-GRP2.3
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	6.92	0.8106	HFO909
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.016G043800 [exp]	9.16	0.7553	EIF3.3
AT2G47920			Kinase interacting (KIP1-like)...		Potri.002G207700 [exp]	10.67	0.7941
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G060800 [exp]	12.96	0.7925	Pt-TOPP4.2
AT3G49910			Translation protein SH3-like f...		Potri.005G082600 [exp]	14.28	0.8082	Pt-RPL26.1
AT5G42655			Disease resistance-responsive ...		Potri.002G131500 [exp]	15.49	0.7616
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.009G163800 [exp]	24.49	0.6482
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.009G090000 [exp]	25.61	0.7814
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.005G023500 [exp]	26.68	0.7965	Pt-RPL18.12

Compare expression of checked genes

Potri.009G132000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.