Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34950 662 / 0 Major facilitator superfamily protein (.1) AT2G16660 641 / 0 Major facilitator superfamily protein (.1) AT5G50520 227 / 4e-67 Major facilitator superfamily protein (.1) AT5G50630 227 / 4e-67 Major facilitator superfamily protein (.1) AT1G74780 166 / 9e-45 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G39210 157 / 3e-41 Major facilitator superfamily protein (.1) AT2G34355 154 / 1e-40 Major facilitator superfamily protein (.1) AT1G18940 152 / 5e-40 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34350 151 / 1e-39 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G28120 152 / 2e-39 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173400 [exp] 828 / 0 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 586 / 0 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 163 / 2e-43 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 153 / 7e-40 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 147 / 1e-37 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G204700 [exp] 144 / 6e-37 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 143 / 2e-36 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 143 / 3e-36 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.008G032901 [exp] 142 / 4e-36 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025053 [exp] 644 / 0 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 629 / 0 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 165 / 4e-44 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 163 / 2e-43 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 163 / 3e-43 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 160 / 2e-42 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 157 / 2e-41 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 155 / 6e-41 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10014640 [exp] 148 / 5e-38 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10023961 [exp] 147 / 8e-38 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.009G132700.1 pacid=42771350 polypeptide=Potri.009G132700.1.p locus=Potri.009G132700 ID=Potri.009G132700.1.v4.1 annot-version=v4.1 ATGGGTTATCTTCAAACCTCTTCAACTTCTTTCAAAGCTACAAAATGGCTAGGCTTTGTAACTGCTGTTTGGGTCCAAGCTATTTCAGGCAACAATTACA CCTTCTCAAACTATTCTGATGCACTTAAAACACTTATGAGTTTGACACAACTTGAACTCAACAATTTGTCCGTTGCTAAAGATGTTGGCAAGGCCTTTGG TTTGCTTGCTGGTCTTGCTTCTGATCGTTTGCCCACTCCTGTTATTCTTCTTATTGGTTCAATTGAAGGTCTTATTGGTTATGGTACTCAATGGCTTGTT GTTAGTAGGAGAATTCAACCCCTCTCTTACTGGCAGATGTGCATATTCCTATGTCTAGGAGGCAACAGCACCACTTGGATGAACACGGCGGTTTTAGTAA CCTGCATCCGCAACTTCCGCCGCAACCGCGGCCCTGTCTCTGGAATCTTGAAGGGTTATGTAGGTCTAAGCACCGCCATATTCACCGACCTATGCGCAGC TCTATTTGCGGATGACCCTGCAAAGTTCCTTATAATGCTTGCAGTCATCCCCTTTGCTGTCTGCCTCACCGCCATCGTCTTCCTCCGCGAAACCCCACCT GCCGCCACTATAGAGGAAGAAAAGGAAGAAAGCAAATACTTCAATTTATTCAACGTTGTTGCTGTTATTGTAGCTGTTTACTTGTTGGCATACAGTTTTA TTCCAAATCCTAGCCATGTTCTTTCATCGGTGTTTTCACTTATATTACTAGTTCTTTTAGCTTCTCCATTAGCAGTTCCAGCTCATGCTTTTATTAATAG CTGGAATCTGAACCGGTTCAAGAACCAAGAAGATGTTGAAAGACAAATTCAAGAACCTTTATTGAGAGAAGATAAAACCCAGGAGAAGATTCAAGAAAAG CCAGCGGAGGAGGCTGCAAAAGCAGTGGTGGAGCGAACACGAGCTGTAGAGGAGGAGAAGGCAGTGGAGGTGGTGAAGAGGAGGCCGGTTATTGGAGAGG ATCATACAGTTTTTGAGGCAATGTCGACTGTTGATTTTTGGATTCTGTTTCTGTCTTTCCTTTGTGGGGTTGGCACAGGTTTGGCTGTGATGAATAATAT GGGACAGATTGGTTTGGCTCTTGGATATGCTGATGTTTCTCTCTTTGTTTCCATGACAAGTATATGGGGATTCTTTGGAAGGATTATTTCTGGTACTGTG TCTGAGTACTACATCAAGAAAGCGGGAACACCAAGGCCTCTTTGGAATGCAGCATCTCAGATTTTAATGGCTGTTGGCTACATCCTCATGGCTGTGGCTT TGCCTGGATCCTTGTACATTGGTTCAATTGTTGTTGGCGTCTGCTACGGAGTTCGTTTAGCTGTCTCAGTCCCAACTGCCTCTGAACTGTTTGGTCTCAA GTACTTTGGTCTAATTTACAACATCTTAATCCTCAACCTTCCTCTTGGTTCCTTCCTCTTTTCTGGTCTGCTTGCCGGACTTTTATACGACGCACAAGCT ACCCCGACACCAGGAGGTGGCAACACTTGTGTTGGTGCCCATTGTTATAGACTTGTGTTCATTATCATGGCCGTTGCATGTGTCATTGGGTTTGGTTTGG ATGTCCTATTGGGAATCAGAACCAAGAAGATTTATACCAAGATTTACATGAGCAGAAGATCAAAGAAATTGGCTTCAGCATCCAATCTACAGTGA
AA sequence Show only first row Show all	>Potri.009G132700.1 pacid=42771350 polypeptide=Potri.009G132700.1.p locus=Potri.009G132700 ID=Potri.009G132700.1.v4.1 annot-version=v4.1 MGYLQTSSTSFKATKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMSLTQLELNNLSVAKDVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLV VSRRIQPLSYWQMCIFLCLGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFADDPAKFLIMLAVIPFAVCLTAIVFLRETPP AATIEEEKEESKYFNLFNVVAVIVAVYLLAYSFIPNPSHVLSSVFSLILLVLLASPLAVPAHAFINSWNLNRFKNQEDVERQIQEPLLREDKTQEKIQEK PAEEAAKAVVERTRAVEEEKAVEVVKRRPVIGEDHTVFEAMSTVDFWILFLSFLCGVGTGLAVMNNMGQIGLALGYADVSLFVSMTSIWGFFGRIISGTV SEYYIKKAGTPRPLWNAASQILMAVGYILMAVALPGSLYIGSIVVGVCYGVRLAVSVPTASELFGLKYFGLIYNILILNLPLGSFLFSGLLAGLLYDAQA TPTPGGGNTCVGAHCYRLVFIIMAVACVIGFGLDVLLGIRTKKIYTKIYMSRRSKKLASASNLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34950			Major facilitator superfamily ...		Potri.009G132700 [exp]	0	1
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G064000 [exp]	10.09	0.8376	ATMEPCT.1
AT1G01490			Heavy metal transport/detoxifi...		Potri.004G073000 [exp]	10.09	0.8434
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	10.19	0.8631
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	20.09	0.8499
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.001G462600 [exp]	20.12	0.8027
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.002G236500 [exp]	26.64	0.8400
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	28.35	0.8402
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G099400 [exp]	34.32	0.8084
AT1G76250			unknown protein		Potri.002G011400 [exp]	36.85	0.8279
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	37.73	0.8257

Compare expression of checked genes

Potri.009G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.