Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38640 634 / 0 Plasma-membrane choline transporter family protein (.1) AT3G15380 55 / 9e-08 Plasma-membrane choline transporter family protein (.1) AT1G25500 46 / 6e-05 Plasma-membrane choline transporter family protein (.1.2.3) AT5G13760 43 / 0.0005 Plasma-membrane choline transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173600 [exp] 796 / 0 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.010G128100 [exp] 50 / 3e-06 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.008G118200 [exp] 47 / 3e-05 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.009G056700 [exp] 45 / 0.0002 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025051 [exp] 608 / 0 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034492 [exp] 576 / 0 AT4G38640 645 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10035837 [exp] 56 / 9e-08 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10036620 [exp] 54 / 2e-07 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034295 [exp] 49 / 1e-05 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10041476 [exp] 49 / 1e-05 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [poplar] [flax] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Potri.009G132900.1 pacid=42770913 polypeptide=Potri.009G132900.1.p locus=Potri.009G132900 ID=Potri.009G132900.1.v4.1 annot-version=v4.1 ATGGGTAGTGGTGAAGAAGCCAACAAACCGACTTCACTTTATGATTCCTCTTCACAATCACAACCTCTGCTCTTGAAACCTCCTTCAATTGAAGAGCCGA ACCAACCTGACCAACCTGAATCTGACCCGACCCAGTACCTCCAGATCTCCTACAATTATGGTCCTAGACCTTTTAAAGACCTTCCTTTTGTAATCTTTTT TGTTTTTGTTGTTCTTTGTACTTTTGGGTTCGGTATCTTCTCTGTTTTTCACAAAAATTCTAATTACTCCAATCTATCTTCTTATAAATATGATTTGAAT TCTAATTCTTGTGCAAGAAATTCGACCTTTAATGGTTTTTACGAGTCAAGATTTGATTTTTATGCTTTGAGTTCATCAGGTTCAGTTTTTTTGAAGTCTT TGATATGGACCCTCGTAGTTACTTTGATTTTGAGTGTGCCCATTTGTTTTCTTTTGCTTCTTTCGCTTAAACATTACACTAAGCAGATTGTTTATGTGTC ACTTCCTTTTTTTGTTGTCATACCTATCTTCTTTAACGTGTACTGGTTTGTTGCTTGTACTGTTAGCTCTTCTTGCAGTGATGCATTCCCTTTAGTTTAT AGAATTTTGGTCTTGGTTTTCGTGTTCTTGATTATTGGGATCATTGTGTGGATTTTTGTAGCTAATTGGCATAGAATTGAATTAACAGTGAAGATAATTG GGGTTGCCTCTGATGCTTTGTCTAAGAATTTGGGTTTGTTTGTGGTGATCCCGTTGTTAACGCTTGGATTAGTGGTTTATTATGCGCCAATAGTGGTATT TTTAGTGTTTGCGAGATTGAATGGGAAAATTGTGCCTAAGGAATCAAATGGAGAATATAGGTGTGTTTGGAAGCAGGATAGTTGGGTGCCAGCATACTAC ACATTGGCAATTCTTACAATGTTGTGGTCTTTGACTATTATGGTTGAAGCTCAGGTTTATGTTATAAGTGGAACTGTTGCACAGTGGTACTTCACGAAGG AGGATGCAAAACCTAGAAGAAGTATAAGAAGTTCTTTGAGACATGCCTTTGGTCCCTCGTCAGGCACTGTATGTTTATCTGGACTGCTTATTTGTGTTGT TCGCTTTGTGCGTGCCGTTGTCGATAGTGCAAGACAAGAAGATGTTCCTGGGATGGTGAACCTTGTCTTGCGGTGTTGTGTCAAAGCATTACTTTCAGCA GTAGATTTTCTTAACAAGTTCACAATCAACTTCGTGGCAATAACCGGTGAAGGCTACTGCACTTCTGCAAGGATGACATATGAACTATTAAAACGTAATC TGCTATCTGCTGTTTTTGTTGAAACCGTCTCCACTCGTTTGCTGGCTGGAATTACATTCGTACTCTCAGCAATATATGCAATTGTGGTCTGCGCTATCCT GAAAGGTGCAAGCAGTATGGGGGTTTATTCATACGTTGTAGCAGTTCTCGCATGGGCACTCCTGATTATTGTGCTGGGTTTCTTTGTTCATGTGCTGGAC AATGTGATCGAGACTGTTTATGTATGCTATGCCATAGATAGGGATAGGGGAGAGGTTTACAGAACAGAGGTCCATGAGGTTTACAGTCAGCTGCCTATTA GTAGAAATCATAGGCCGCCTATTGCTCCCATTGCTCCTGTTGTATAA
AA sequence Show only first row Show all	>Potri.009G132900.1 pacid=42770913 polypeptide=Potri.009G132900.1.p locus=Potri.009G132900 ID=Potri.009G132900.1.v4.1 annot-version=v4.1 MGSGEEANKPTSLYDSSSQSQPLLLKPPSIEEPNQPDQPESDPTQYLQISYNYGPRPFKDLPFVIFFVFVVLCTFGFGIFSVFHKNSNYSNLSSYKYDLN SNSCARNSTFNGFYESRFDFYALSSSGSVFLKSLIWTLVVTLILSVPICFLLLLSLKHYTKQIVYVSLPFFVVIPIFFNVYWFVACTVSSSCSDAFPLVY RILVLVFVFLIIGIIVWIFVANWHRIELTVKIIGVASDALSKNLGLFVVIPLLTLGLVVYYAPIVVFLVFARLNGKIVPKESNGEYRCVWKQDSWVPAYY TLAILTMLWSLTIMVEAQVYVISGTVAQWYFTKEDAKPRRSIRSSLRHAFGPSSGTVCLSGLLICVVRFVRAVVDSARQEDVPGMVNLVLRCCVKALLSA VDFLNKFTINFVAITGEGYCTSARMTYELLKRNLLSAVFVETVSTRLLAGITFVLSAIYAIVVCAILKGASSMGVYSYVVAVLAWALLIIVLGFFVHVLD NVIETVYVCYAIDRDRGEVYRTEVHEVYSQLPISRNHRPPIAPIAPVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38640			Plasma-membrane choline transp...		Potri.009G132900 [exp]	0	1
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	7.00	0.7786
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	7.00	0.8258
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123400 [exp]	7.21	0.8299
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	7.34	0.8305	AHA10.1
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	9.00	0.8399
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	9.48	0.8286	Pt-TAN1.2
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	9.69	0.8332	Pt-EU3.1
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	11.83	0.8194	Pt-MYB.42,MYB181
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.008G081500 [exp]	15.42	0.8108
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	15.74	0.8249	APK1.1

Compare expression of checked genes

Potri.009G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.