Plant FIBer expression Database

Potri.009G133000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38630 434 / 8e-152 ATMCB1, MBP1, AT-MCB1 ,RPN10 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G173700
[exp]
609 / 0 AT4G38630 397 / 5e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Potri.007G056200
[exp]
471 / 4e-166 AT4G38630 397 / 6e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025050
[exp]
528 / 0 AT4G38630 509 / 4e-180 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Lus10034493
[exp]
511 / 0 AT4G38630 512 / 0.0 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02809 UIM Ubiquitin interaction motif
CL0128 vWA-like PF13519 VWA_2 von Willebrand factor type A domain
Representative CDS sequence
>Potri.009G133000.3 pacid=42771709 polypeptide=Potri.009G133000.3.p locus=Potri.009G133000 ID=Potri.009G133000.3.v4.1 annot-version=v4.1
ATGGTTCTCGAGGCGACTATGATATGCATCGACAACTCAGAATGGATGCGAAACGGCGATTACTCTCCTTCTCGCTTTCAAGCTCAAGCTGATGCTGTTA
ATCTCTTATGCGGCGCTAAAACCCAATCGAATCCAGAGAATACAGTCGGGATATTAACAATGGCCGGCAAACAAGTTCGGGTTTTGACTACTCTGACTAG
TGATCTGGGCAAGATTTTGTCTTGTATGCACGGTCTTGAAGTGGGTGGTGAGATGAATCTATCAGCAGGAATTCAGGTTGCACAACTAGCTCTTAAGCAT
CGTCAAAACAAAAATCAGCAGCAAAGAATAATAGTTTTTGCCGGAAGTCCTATCAAATATGACAAGAAAATGTTGGAGACCATAGGGAAGAAATTAAAGA
AGAACAATGTATCTCTAGATATTGTTGATTTTGGTGAAGAAGAGGATGGGAAACCGGAGAAGTTGGAGGCTCTCTTCGCTGCTGTCAATAGCAATGACAG
TAGCCATATAGTTCACATTCCTCCTGGTGGAACTGCTATTTCTGATGCTCTGATGAACACACCTGTATTCACTGGAGATGGGGAAGGAGGAAGTGGTTTT
GCTGCAGCAGCTGCAGCGGCTGCAGCTGGTGGTGGTGACTTTGATTTTGGCGTAGATCCTAATTTAGACCCAGAGCTGGCTCTTGCCCTTAGAGTTTCTA
TGGAAGAGGAGAGAGCTAGGCAAGAAGCTGCTGCAAAAAGGGCTGCTGATGAAGCTGCTAGACAAGAAAAGGGAGAAGAACCATCATCCAAATCACAGGA
TACAACAATGGTCGACAAGGCTGCTGAAGCAACTAACAGTGCTGCTGATCCAATGGATGAAGTGAATGCATTGCTTCAGCAGGCTATTGCACTGTCAATG
GAAAACCCTGTATCCGATCCCTCTGTCCGTGATTCTGAAATGGCAGAGGCAACTAATGACGATCAAGATTTGGCTATGGCTCTTCAGATGTCCATTCAGG
AAACCGCAAAAGATTCATCAAGTCAGTCAGACATGAGCAAGGCACTGGAGGATCAGTCTTTTGTGTCATCTGTCCTTGCATCACTTCCAGGAGTTGATCC
TAACGATCCCTCAGTGAAGGAGCTGCTAGCATCTTTCCAAGGCCAATCTGAGTCTGGACAAAAGAAGGAGGAAGATAAGCCACCAAGTGATGACAAGTGA
AA sequence
>Potri.009G133000.3 pacid=42771709 polypeptide=Potri.009G133000.3.p locus=Potri.009G133000 ID=Potri.009G133000.3.v4.1 annot-version=v4.1
MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLLCGAKTQSNPENTVGILTMAGKQVRVLTTLTSDLGKILSCMHGLEVGGEMNLSAGIQVAQLALKH
RQNKNQQQRIIVFAGSPIKYDKKMLETIGKKLKKNNVSLDIVDFGEEEDGKPEKLEALFAAVNSNDSSHIVHIPPGGTAISDALMNTPVFTGDGEGGSGF
AAAAAAAAAGGGDFDFGVDPNLDPELALALRVSMEEERARQEAAAKRAADEAARQEKGEEPSSKSQDTTMVDKAAEATNSAADPMDEVNALLQQAIALSM
ENPVSDPSVRDSEMAEATNDDQDLAMALQMSIQETAKDSSSQSDMSKALEDQSFVSSVLASLPGVDPNDPSVKELLASFQGQSESGQKKEEDKPPSDDK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G38630 ATMCB1, MBP1, A... MULTIUBIQUITIN-CHAIN-BINDING P... Potri.009G133000
[exp]
0 1
AT3G22110 PAC1 20S proteasome alpha subunit C... Potri.006G008800
[exp]
1.73 0.8928 Pt-PAC1.1
AT2G27020 PAG1 20S proteasome alpha subunit G... Potri.001G224100
[exp]
2.44 0.8579 Pt-PAG1.1
AT3G07910 unknown protein Potri.001G277100
[exp]
3.31 0.7718
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Potri.016G091200
[exp]
4.47 0.7750
AT3G05530 ATS6A.2, RPT5A regulatory particle triple-A A... Potri.005G025100
[exp]
5.19 0.7834 Pt-RPT5.1
AT1G66680 AR401 S-adenosyl-L-methionine-depend... Potri.015G062400
[exp]
8.66 0.7562 Pt-AR401.1
AT2G31490 unknown protein Potri.006G077400
[exp]
8.77 0.7845
AT1G22520 Domain of unknown function (DU... Potri.013G105766
[exp]
9.16 0.7866
AT5G10780 unknown protein Potri.006G266300
[exp]
9.79 0.7628
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Potri.009G136900
[exp]
9.79 0.7963

Potri.009G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.