Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UF3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17050 371 / 1e-124 UGT78D2 UDP-glucosyl transferase 78D2 (.1) AT1G30530 340 / 1e-112 UGT78D1 UDP-glucosyl transferase 78D1 (.1) AT5G17040 325 / 6e-107 UDP-Glycosyltransferase superfamily protein (.1) AT5G17030 322 / 2e-105 UGT78D3 UDP-glucosyl transferase 78D3 (.1) AT1G78270 157 / 2e-42 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G43820 156 / 2e-42 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G36970 156 / 4e-42 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 155 / 6e-42 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 154 / 2e-41 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G31790 152 / 5e-41 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078400 [exp] 754 / 0 AT5G17050 358 / 6e-120 UDP-glucosyl transferase 78D2 (.1) Potri.013G118700 [exp] 416 / 3e-142 AT5G17050 533 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.013G143900 [exp] 411 / 1e-140 AT5G17050 518 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.006G171268 [exp] 350 / 8e-117 AT5G17050 389 / 5e-132 UDP-glucosyl transferase 78D2 (.1) Potri.006G171100 [exp] 349 / 3e-116 AT5G17050 392 / 2e-133 UDP-glucosyl transferase 78D2 (.1) Potri.018G096000 [exp] 337 / 3e-111 AT5G17050 408 / 1e-139 UDP-glucosyl transferase 78D2 (.1) Potri.006G171156 [exp] 284 / 4e-92 AT5G17050 343 / 1e-115 UDP-glucosyl transferase 78D2 (.1) Potri.006G171128 [exp] 198 / 2e-60 AT5G17050 254 / 1e-82 UDP-glucosyl transferase 78D2 (.1) Potri.004G123500 [exp] 175 / 2e-49 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025854 [exp] 338 / 6e-112 AT5G17050 523 / 0.0 UDP-glucosyl transferase 78D2 (.1) Lus10021438 [exp] 175 / 6e-49 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 174 / 1e-48 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 172 / 9e-48 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 167 / 2e-46 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 166 / 4e-46 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016459 [exp] 166 / 8e-46 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10016128 [exp] 162 / 4e-44 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 160 / 1e-43 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 154 / 2e-41 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G133300.1 pacid=42771412 polypeptide=Potri.009G133300.1.p locus=Potri.009G133300 ID=Potri.009G133300.1.v4.1 annot-version=v4.1 ATGTCAAGCTGCACAACACCAATCAAACACGCAGATAAAAAAATGCATGTTGCCGTCTTTGCATTCCCTTTTGGTTCTCATGCTCTCTCTCTCATTGATC TAGTGCTGAAGTTAGCGAGGGTTGCCCAGGAAACGAGATTTTCCTTTTTTAACACCGAAAAATCCAACAATTCGATCTTCTTAGCATCAAGAACCAACCT ACCTGGTAACATTAAAGCCTACAATGTAGCGGATGGCGTGCCGCTGAATCATGTTTTCTCTGGACATCCAATAGAAAGAGTCGAGCTATTCATAAAGGAA ACGCCGGAGAACTTTCAGACGGCATTGGACATGGCAGTGGCGGAAACTGGCCAAAAAATAAGTTGCTTGCTAACAGATGCGTTCTTGTCCTTTGCTGGAT CAATCGCTGAGAATTTGAGCGTTCCTTGGATTCCTGTTTGGACCCCAGTGCCTCATTCCCTCTCTGCACATATTTATACTGATATGATTCGCCAACGCTA CGCCAATTCTCTTATTCATGATGGCAGCAACAGTGGCAGAGATGGCAACGATGTAGAGCTTGAAGACCAAACTTTGGAAGTTCCAGGATTATCTCAATTT CACATTGCAGATCTGCCTGCTGAAGTGTTACCAAGAGATGCACAAGAAACACTCTTTTCTTGCATGTTAGGCCAAATTAGACACATGGTGCCAAAAGTAG ATACTCTAGTTCTGACCTTTTACCAAGAGCTCTACTCTGAACCCCACTTAAGCGATCTCAAATCCAAGTTTTCGAACTTGCTTAATGTCGGCTTTATTAG CCTATCCATGCCACCACCATCGTTGCCACCTTCAACTGAAGATGCCACAGGTTGTCTATCATGGTTGGATAGTCAAAAGGCTAAGTCTGTGGCGTTTATC AGCTTTGGAACTGTAGTGAATATCCCTCATAGTGAGATAGAAGAGCTAGCAGAGGCTCTTGAAGTTTGTAGAATTCCATTCCTTTGGTCTCTTAGGGACA ACATGAGGGATTGCTTGCCGAATGGGTTCCTAGACAGGACTATCACGCATGGAAAGGTGGTTCCATGGGCACCTCAGATTCAAGTATTGGGACATAGCTC AATTGGCGTGTTTATGACACATTGTGGAGCTAATTCTGTGTATGAGAGTATTGCAAATGGGGTTCCAATGATCTGTAGACCATTCTTTGCGGATCATAAG TTGATTGCAAGATTAATAGCGGACGATTGGAGAGTTGGTGTGAGAATTGACGGGGGTGTTTTCACAAAGACTGGAGTTGCCAAGAGCTTGGACCTCATCT TGGAACGTGAACAAGGGAGAACAATTCGGAGCACAGTCCAAGCCCTTAAAGAGCTTGTATTGAAGGCATCTGCACCTGGTGGCCGTGCTACACAAGATTT CAAGATTTTGGTGGAAAAGATCACATCGGTGTAA
AA sequence Show only first row Show all	>Potri.009G133300.1 pacid=42771412 polypeptide=Potri.009G133300.1.p locus=Potri.009G133300 ID=Potri.009G133300.1.v4.1 annot-version=v4.1 MSSCTTPIKHADKKMHVAVFAFPFGSHALSLIDLVLKLARVAQETRFSFFNTEKSNNSIFLASRTNLPGNIKAYNVADGVPLNHVFSGHPIERVELFIKE TPENFQTALDMAVAETGQKISCLLTDAFLSFAGSIAENLSVPWIPVWTPVPHSLSAHIYTDMIRQRYANSLIHDGSNSGRDGNDVELEDQTLEVPGLSQF HIADLPAEVLPRDAQETLFSCMLGQIRHMVPKVDTLVLTFYQELYSEPHLSDLKSKFSNLLNVGFISLSMPPPSLPPSTEDATGCLSWLDSQKAKSVAFI SFGTVVNIPHSEIEELAEALEVCRIPFLWSLRDNMRDCLPNGFLDRTITHGKVVPWAPQIQVLGHSSIGVFMTHCGANSVYESIANGVPMICRPFFADHK LIARLIADDWRVGVRIDGGVFTKTGVAKSLDLILEREQGRTIRSTVQALKELVLKASAPGGRATQDFKILVEKITSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G133300 [exp]	0	1	Pt-UF3.2
AT1G07080			Thioredoxin superfamily protei...		Potri.016G122000 [exp]	12.24	0.9549
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052300 [exp]	17.83	0.8910
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Potri.004G019000 [exp]	20.49	0.9512
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	21.26	0.9505
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.001G092200 [exp]	21.49	0.9373
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	22.69	0.9087
AT2G44930			Plant protein of unknown funct...		Potri.005G008500 [exp]	25.80	0.9434
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	28.72	0.8888
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.016G135700 [exp]	28.87	0.9496
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	29.24	0.9500

Compare expression of checked genes

Potri.009G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.