Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34980 1121 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 822 / 0 Subtilase family protein (.1) AT5G67360 729 / 0 ARA12 Subtilase family protein (.1) AT2G05920 717 / 0 Subtilase family protein (.1) AT5G51750 680 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 669 / 0 Subtilase family protein (.1) AT1G04110 587 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 575 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 575 / 0 ATSBT5.4 Subtilase family protein (.1) AT1G01900 567 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173900 [exp] 1349 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G163600 [exp] 847 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 840 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 717 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 701 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 698 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.003G067000 [exp] 694 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 689 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 686 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013187 [exp] 788 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 778 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 718 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 711 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 701 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 697 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10034496 [exp] 689 / 0 AT4G34980 670 / 0.0 subtilisin-like serine protease 2 (.1) Lus10019285 [exp] 675 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 665 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 647 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.009G133400.1 pacid=42771533 polypeptide=Potri.009G133400.1.p locus=Potri.009G133400 ID=Potri.009G133400.1.v4.1 annot-version=v4.1 ATGGCTCCATTTCTCTCCTCTTCCCTCCCCCTCCTCCTCCTCTCCTTTCTCCCTCTCCTCTCCCTATCCTTCTCCACCGTTGATCAACCCTACAAAACCT ACATCATTCGCATTGACTCTCAATCTAAGCCCTCCATTTTTCCCACTCACTACAACTGGTACACCACTGAATTCACTAGCACCCCACAAATCCTCCACAC TTACGACACCGTTTTCCATGGCTTCTCCGCCATACTAACAACAGACCGCGCCGCCACTCTCAGCCAACACCCATCAGTCCTCGCCGTGATCGAAGACCAA CGGAAACAACTCCACACCACTCGGTCTCCTCAGTTTCTTGGACTCAGAAACCAACGTGGGCTCTGGTCGGATTCTAATTATGGTTCTGATGTTATCATTG GCGTTTTGGATACTGGGATCTGGCCTGAAAGACGGAGCTTCTCGGATGTCAATCTAGGGCCGGTTCCTGGCCGGTGGAAAGGAATTTGTGAAGCTGGCGA AAGATTTACAGCAAGAAACTGCAACAAGAAGCTGATCGGTGCCCGTTTTTTTATCAAAGGACATGAGGCAGTAGGTGGGGCTATGGGACCGATTAGTCCT ATCAATGACACTCTGGAGTTTAAGTCTCCGCGTGATGCCGATGGTCATGGGACTCACACGGCATCAACTGCGGCAGGAAGGCATGCGTTTCGTGCTAGCA TGGAAGGTTTTGCAGCGGGGATTGCGAAAGGGGTAGCTCCGAAAGCACGTTTGGCTGTGTATAAAGTTTGCTGGAAGAATGCAGGATGTTTTGATTCTGA TATTTTAGCTGCTTTTGATGCTGCTGTTAAAGATGGAGTTGATGTCATCTCGATTTCCATTGGTGGTGGTAATGGGATTTCGGCGCCTTATTATCTTGAT CCGATTGCCATTGGTGCTTATGGAGCGGCTTCTAGAGGGGTTTTTGTGTCGTCTTCGGCTGGGAATGATGGGCCTAATTTTATGTCAGTTACGAATCTTG CTCCTTGGATTGTTACTGTTGGTGCTGGAACAATTGACAGGAGTTTCCCTGCTGTTGTTGTTCTTGGTAATGGGAAGAAATTATCTGGTGTTTCGCTATA TGCTGGTTTGCCATTGAGTGGTAAAATGTATCCTCTGGTTTATCCAGGGAAATCAGGGGTTTTGGCAGCGTCACTGTGTATGGAAAATTCGTTGGATCCT AAGATGGTGAGAGGGAAAATTGTTGTTTGTGATCGCGGAAGTAGTCCAAGAGTGGCTAAAGGTTTGGTTGTTAAGAAAGCTGGAGGTGTTGGTATGATTC TTGCTAATGGAGTTTCTAATGGTGAAGGATTAGTTGGTGATGCTCATTTAATTCCTGCTTGTGCTCTTGGTTCCGACGAGGGTGATGCTGTTAAGGCCTA TGTTTCATCAACGTCGAATCCGGTTGCTACTATTGCTTTCAAGGGTACCGTGATTGGAATCAAACCAGCTCCTGTTGTTGCTTCGTTTTCAGGTAGAGGA CCAAATGGAATAAGCCCGGAGATTCTTAAGCCGGATTTGATTGCTCCTGGTGTGAACATTCTTGCTGCTTGGACTGATGCTGCTGGTCCAACTGGATTGG AATCAGATCCACGAAAAACTGAATTCAACATCCTTTCTGGCACTTCAATGGCATGTCCTCATGTAAGTGGCGCGGCAGCCTTGCTTAAATCTGCTCACCC ACATTGGAGTCCAGCAGCGATTAGGTCTGCAATGATGACTACCGCGAATACATTCAATAATCTAAACCAGCCAATGACCGATGAGGCCACTGGAAAGGTG TCGTCACCATATGATTTGGGTGCAGGACATCTCAATCTTGATCGAGCAATGGATCCAGGGCTTGTTTATGATATTACAAACAATGATTATGTGAACTTTT TGTGTGGAATTGGATATGGGCCAAGAGTAATTCAGGTGATCACACGATCACCTGTGAGTTGTCCAGTGAAGAAACCATTGCCAGAGAACCTCAATTACCC TTCTCTTGCAGCGCTGTTTTCAAGCTCAGCTAAGGGAGCATCAAGCAAGACATTCATTAGAACAGTCACCAATGTGGGTCAACCAAATGCCGTTTATCGT TTTACAACCCAAGCTCCGAAAGGGGTTACAGTGACAGTGAAACCACGAAAATTGGTGTTCACTGAGGCCGTGAAGAAGCGGAGCTTCATTGTAACCATAA CAGCCGATACCCGGAATCTGATCATGGGTGATTCGGGTGCTGTATTCGGGTCAATTTCGTGGTCGGATGGGAAGCACGTTGTTAGGAGTCCCATTGTGGT GGCCCAGATAGATCCCTTGTAA
AA sequence Show only first row Show all	>Potri.009G133400.1 pacid=42771533 polypeptide=Potri.009G133400.1.p locus=Potri.009G133400 ID=Potri.009G133400.1.v4.1 annot-version=v4.1 MAPFLSSSLPLLLLSFLPLLSLSFSTVDQPYKTYIIRIDSQSKPSIFPTHYNWYTTEFTSTPQILHTYDTVFHGFSAILTTDRAATLSQHPSVLAVIEDQ RKQLHTTRSPQFLGLRNQRGLWSDSNYGSDVIIGVLDTGIWPERRSFSDVNLGPVPGRWKGICEAGERFTARNCNKKLIGARFFIKGHEAVGGAMGPISP INDTLEFKSPRDADGHGTHTASTAAGRHAFRASMEGFAAGIAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVKDGVDVISISIGGGNGISAPYYLD PIAIGAYGAASRGVFVSSSAGNDGPNFMSVTNLAPWIVTVGAGTIDRSFPAVVVLGNGKKLSGVSLYAGLPLSGKMYPLVYPGKSGVLAASLCMENSLDP KMVRGKIVVCDRGSSPRVAKGLVVKKAGGVGMILANGVSNGEGLVGDAHLIPACALGSDEGDAVKAYVSSTSNPVATIAFKGTVIGIKPAPVVASFSGRG PNGISPEILKPDLIAPGVNILAAWTDAAGPTGLESDPRKTEFNILSGTSMACPHVSGAAALLKSAHPHWSPAAIRSAMMTTANTFNNLNQPMTDEATGKV SSPYDLGAGHLNLDRAMDPGLVYDITNNDYVNFLCGIGYGPRVIQVITRSPVSCPVKKPLPENLNYPSLAALFSSSAKGASSKTFIRTVTNVGQPNAVYR FTTQAPKGVTVTVKPRKLVFTEAVKKRSFIVTITADTRNLIMGDSGAVFGSISWSDGKHVVRSPIVVAQIDPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G133400 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.008G137801 [exp]	1.41	0.8844
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	2.00	0.8944
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	8.66	0.8757
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	8.77	0.8535	XYL1.1
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	10.19	0.8643
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	12.40	0.8454
AT3G10260			Reticulon family protein (.1.2...		Potri.005G206800 [exp]	12.52	0.7751
AT2G01818			PLATZ transcription factor fam...		Potri.008G137300 [exp]	16.00	0.8530
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.011G145100 [exp]	18.33	0.8267
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	18.70	0.8228

Compare expression of checked genes

Potri.009G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.