Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35000 454 / 8e-163 APX3 ascorbate peroxidase 3 (.1) AT4G35970 358 / 3e-125 APX5 ascorbate peroxidase 5 (.1) AT1G07890 310 / 6e-107 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT3G09640 310 / 1e-106 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G08390 246 / 9e-80 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 246 / 4e-79 TAPX thylakoidal ascorbate peroxidase (.1) AT4G32320 127 / 2e-34 APX6 ascorbate peroxidase 6 (.1) AT4G17690 86 / 4e-19 Peroxidase superfamily protein (.1) AT4G16270 85 / 1e-18 Peroxidase superfamily protein (.1) AT5G40150 82 / 1e-17 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174500 [exp] 507 / 0 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.005G112200 [exp] 423 / 1e-150 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 329 / 3e-114 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 325 / 1e-112 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.006G132200 [exp] 322 / 2e-111 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.002G081900 [exp] 246 / 2e-79 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.005G179200 [exp] 244 / 1e-78 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G254500 [exp] 130 / 1e-35 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1) Potri.006G089000 [exp] 111 / 1e-30 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014128 [exp] 449 / 5e-161 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 443 / 9e-158 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 363 / 4e-127 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 330 / 4e-114 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10019906 [exp] 322 / 3e-111 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10013537 [exp] 320 / 9e-111 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 318 / 4e-109 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10025680 [exp] 241 / 3e-77 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 226 / 2e-71 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 137 / 2e-38 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.009G134100.4 pacid=42772427 polypeptide=Potri.009G134100.4.p locus=Potri.009G134100 ID=Potri.009G134100.4.v4.1 annot-version=v4.1 ATGGCGTTACCGGTCGTTGACACAGAGTACCTGAAAGAGATCGACAAAGCACGTCGCGATCTCCGTGCTCTCATCGCTTACAAAAGCTGCGCTCCTCTCA TGCTTCGCTTAGCGTGGCATGATGCAGGAACGTATGATAAGAACTCGAAAACAGGAGGAGCTAATGGTTCGATAAGGAATGAAGAAGAGTACTCTCATGG TTCTAATAGTGGCTTGAAAATAGCTATCGATTTTTGCGAGGGAGTGAAGGCGAAACATCCGAAGATTACTTATGCGGATTTATACCAGCTTGCAGGTGTT GTTGCAGTGGAGGTCACTGGGGGTCCAACCATTGATTTTGTTCCTGGTAGAAGGGATTCAAATATTTGTCCCAAGGAAGGGCGACTTCCAAATGCTAAAC TAGGTTCACCACATTTGAGGGACATCTTTTATCGGATGGGTCTGTCTGATAAAGATATCGTGGCACTTTCTGGAGGTCATACTCTGGGAAGGGCACATCC AGACAGATCCGGTTTTGAAGGGCCCTGGACTCAGGAACCTCTAAAGTTTGATAACTCGTATTTTGTGGAAATGTTGAAAGGGGAGACAGACGGGTTATTG AAACTTCCAACAGACACTGCTTTGTTGGATGACCCTGCGTTCCGTCCTTATGTTGAGCTGTATGCTAAGGACGAAGAAGCATTCTTTAGAGACTACGCGG CTTCGCATAAGAAGCTTTCAGAACTGGGGTTCACTCAAGGGTCTTCTGGGTTCAAGGTAAAGGATACCACTGTACTGGCACAGAGTGCAGCTGGAGTTGC AGTTGCTGCGGCTGTTGTGATCCTTAGCTATTTCTACGAAGTTCGCAAGAAAATGAAGTAG
AA sequence Show only first row Show all	>Potri.009G134100.4 pacid=42772427 polypeptide=Potri.009G134100.4.p locus=Potri.009G134100 ID=Potri.009G134100.4.v4.1 annot-version=v4.1 MALPVVDTEYLKEIDKARRDLRALIAYKSCAPLMLRLAWHDAGTYDKNSKTGGANGSIRNEEEYSHGSNSGLKIAIDFCEGVKAKHPKITYADLYQLAGV VAVEVTGGPTIDFVPGRRDSNICPKEGRLPNAKLGSPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPDRSGFEGPWTQEPLKFDNSYFVEMLKGETDGLL KLPTDTALLDDPAFRPYVELYAKDEEAFFRDYAASHKKLSELGFTQGSSGFKVKDTTVLAQSAAGVAVAAAVVILSYFYEVRKKMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Potri.009G134100 [exp]	0	1
AT4G17560			Ribosomal protein L19 family p...		Potri.001G152200 [exp]	9.69	0.9567
AT1G23840			unknown protein		Potri.006G262900 [exp]	16.00	0.9241
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	16.06	0.9543
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Potri.006G197600 [exp]	16.73	0.9398
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Potri.005G106400 [exp]	17.83	0.9259
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G071300 [exp]	20.78	0.9489
AT4G32915			unknown protein		Potri.018G058200 [exp]	21.67	0.8967
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	27.29	0.9460	Pt-RPL12.6
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	28.28	0.9475	TMP14.1
AT3G15110			unknown protein		Potri.011G097800 [exp]	31.63	0.9395

Compare expression of checked genes

Potri.009G134100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.