Plant FIBer expression Database

Potri.009G134500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20980 457 / 3e-160 MCM10 minichromosome maintenance 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019785
[exp]
496 / 2e-175 AT2G20980 382 / 4e-131 minichromosome maintenance 10 (.1)
Lus10014124
[exp]
474 / 6e-167 AT2G20980 378 / 1e-129 minichromosome maintenance 10 (.1)
Lus10005072
[exp]
347 / 3e-116 AT4G27960 291 / 3e-98 ubiquitin conjugating enzyme 9 (.1.2)
Lus10027845
[exp]
107 / 1e-27 AT2G20980 61 / 2e-11 minichromosome maintenance 10 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09329 zf-primase Primase zinc finger
Representative CDS sequence
>Potri.009G134500.1 pacid=42771529 polypeptide=Potri.009G134500.1.p locus=Potri.009G134500 ID=Potri.009G134500.1.v4.1 annot-version=v4.1
ATGTCAAGTAGTCACCAAGAAGATCTTGACCTTCTCCTCTCTCTTCAAGACAGAGTTCTTGAAACCCCTCCTGGTTCCCCTTCAAATCACCATTCCCTTT
CACCAGGGTATTTATCGGATGATGGATCACCAAGGCGAAAAGGGCAGGCTGATTTGTCAGTGTTTAGAGATGCTGTTCAAGATTGTCTTGATTATGAGCC
AAAACCAGTGGTGAAAGCTGGAAAAAAATTGAATGTTTTGAAAAACTCCACTGAGGCTAATGTGGAGAAGTATTCAGGTTTAAGAATAAGGAATCAATCG
GTCACTGCTGTGGAGCTCAGCGAGCGTTTCTCAGAAATTCGCTTTGTTCGGTTACCAACTATTAAAAATTTATTGATGGGAGACACTCTCATGGGATGTT
GGGCAACTGTTGGAGTGTTGATTGAGAAGGGAAGTCCAAAGACTAGTTCTGTTGGGAAGAGCTATTGCATATGGAAATTTGGTTCTTTGGACGAAAGCAG
TATATCTGTTTTCCTGTTTGGCGATGCTTATCAGCAGAACTGTAAAGAGCAAGCCGGGACAGTTTTTGCACTGTTCAATTGCACTGTTCGCAAGGACAAT
GTGGGAACTGGTTTTTCTTTGAGCGTGTTCTCTGCAAATCAAATATTGAAGATGGGTACTTCAATTGATTATGGAGTTTGCAAGGGAAAAAGGAAGGATG
GATTGCCTTGTACACTAGTCATAAATAAACGTCAAGGGATGTATTGCAGGTATCATAACTCTAAAACATCAGAGAGGTTTTCCACAGTGCGAACTGAGCT
TAAGGGAGGGAACTTGAAAACAGCCTTCAGGGATCCTCTCAAGTCACGAGGCATTTACTTGGTCGACCCTCTAGCAGACAAAACATTATTAAAAAAGCCC
ACACAGCCAGTGAAATTATTGTCTGTGGAGGCACTCAAAAGAGCATTGAGCAATGCAGATAAAGTGACAACAAATTCACACTCACAGGGGATAAGGTTCC
TCAATGAAATCACAGGAAAACTGAGCTCAAAAAATTCAGATAAAGTATCTGCCACGCAAAACAGACAAGTAAATAGTTCAGAGAAAAGGAAATCATCTAC
CAAGAAATTGGATCCATCTACGGTCACAAAAAACCAACCAGATTTAAAAAGAAAGAAAACCGTGCAGGGGCAAGCTTCAGTAGACAAAGTCAAGCAGGGG
ACAACAAAGATGATTGAATTAGATATATTTGATTCAGACGAAGAACCATGA
AA sequence
>Potri.009G134500.1 pacid=42771529 polypeptide=Potri.009G134500.1.p locus=Potri.009G134500 ID=Potri.009G134500.1.v4.1 annot-version=v4.1
MSSSHQEDLDLLLSLQDRVLETPPGSPSNHHSLSPGYLSDDGSPRRKGQADLSVFRDAVQDCLDYEPKPVVKAGKKLNVLKNSTEANVEKYSGLRIRNQS
VTAVELSERFSEIRFVRLPTIKNLLMGDTLMGCWATVGVLIEKGSPKTSSVGKSYCIWKFGSLDESSISVFLFGDAYQQNCKEQAGTVFALFNCTVRKDN
VGTGFSLSVFSANQILKMGTSIDYGVCKGKRKDGLPCTLVINKRQGMYCRYHNSKTSERFSTVRTELKGGNLKTAFRDPLKSRGIYLVDPLADKTLLKKP
TQPVKLLSVEALKRALSNADKVTTNSHSQGIRFLNEITGKLSSKNSDKVSATQNRQVNSSEKRKSSTKKLDPSTVTKNQPDLKRKKTVQGQASVDKVKQG
TTKMIELDIFDSDEEP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20980 MCM10 minichromosome maintenance 10 ... Potri.009G134500
[exp]
0 1
AT4G16970 Protein kinase superfamily pro... Potri.001G151900
[exp]
1.00 0.9645
AT1G07270 Cell division control, Cdc6 (.... Potri.001G250200
[exp]
2.00 0.9520
AT3G27120 P-loop containing nucleoside t... Potri.001G331200
[exp]
2.64 0.9394
AT3G55490 GINS complex protein (.1) Potri.010G189200
[exp]
3.00 0.9310 Pt-TTN10.2
AT2G41450 N-acetyltransferases;N-acetylt... Potri.006G045100
[exp]
3.16 0.9441
AT3G59550 ATSYN3, SYN3, A... SISTER CHROMATID COHESION 1 PR... Potri.001G225600
[exp]
3.46 0.9469 SYN3.1
AT2G37960 unknown protein Potri.006G094600
[exp]
3.46 0.9448
AT5G50970 transducin family protein / WD... Potri.015G106300
[exp]
4.47 0.9119
AT2G01120 ORC4, ATORC4 origin recognition complex sub... Potri.008G126300
[exp]
6.92 0.9253
AT4G14970 unknown protein Potri.006G023500
[exp]
6.92 0.9210

Potri.009G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.