Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16750 555 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 445 / 4e-151 Protein kinase superfamily protein (.1.2.3) AT5G63940 442 / 4e-146 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 407 / 7e-132 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 385 / 1e-123 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G57670 269 / 2e-81 Protein kinase superfamily protein (.2) AT5G65530 256 / 5e-78 Protein kinase superfamily protein (.1) AT2G18890 246 / 8e-75 Protein kinase superfamily protein (.1.2) AT3G24540 246 / 2e-73 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G18910 244 / 8e-73 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175100 [exp] 1122 / 0 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 506 / 1e-170 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 496 / 4e-167 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 488 / 8e-164 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 441 / 2e-144 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.002G077900 [exp] 383 / 7e-123 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G096100 [exp] 270 / 9e-82 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 266 / 7e-80 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.007G011700 [exp] 255 / 2e-77 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014122 [exp] 695 / 0 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 683 / 0 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 520 / 6e-176 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 452 / 3e-150 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 415 / 3e-136 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 416 / 2e-135 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 359 / 1e-116 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 357 / 1e-114 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10011098 [exp] 258 / 2e-76 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013014 [exp] 251 / 3e-76 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G134700.4 pacid=42770847 polypeptide=Potri.009G134700.4.p locus=Potri.009G134700 ID=Potri.009G134700.4.v4.1 annot-version=v4.1 ATGACAGTTGAGGAGCTGGAAGCTAAGGCTACTGAAAGGAGGAATGTGTTAGTTGGGATAAGAATAGATAGTCATAGCAGAGAACTACTTAGCTGGGCTA TTGCAAAGGTTGCTGAACCTGGTGATTGTGTTGTTGCTGTTCATGTTTGTGGAAGTTCTGGCCATGCTTTGAGAGACAAGCCTTTGTTGGATAGTTATTT AGAAGTCTATGATGGTCTATGTTCCATGAAGAAGGTAGGCCTCTCTGGTCAGATAGCCAAAGGGATTTCGGTTAGAAGGACTCTGGTTAGAGAGGCAAAG AACTATGCTGCTGTAGCCGTAATTGTGGGGATCAGTAGCCAGGCAGCTCTAAGGGTCTGGGCTTCTACTGCTAAGTATTGCGCCAAGCGACTGCGTCCAA CCACAGATATTATGGCCATCCACAATGGAAAAATTGTGTTTAGAAGGTGCAACAACAATCAACTACCAGGCCTCGGTGGAGATCCAAAACCAAGTTTTAA TATAAATGAAAATTTAAGTTTTAGAGAAATCCAATCTGAATTCGGAGATTCTGAAGCATATACTGAAATATCTAGTTTTGAACTGCTATCAAGAGATGAG ATTGGAGAAATAAAGGATGAAGTTTGCAGCACTGTAAATGCACGTAAGAAGAGATCAAATTCTCTTTTTTCTGGTGATTTTTTGGATCAGAGACCTGGTT GGCCCCTCCTCCGAAGAGCAAGTTCAGCCATTCCACTGAACTTGCATTCCAGGAAACTGTCTGTAGTACAGTGGGCAATGAGCTTACCGGATCGCTCCTC TCAACAAGATCCTCGCGTTTCAACAGCAGAAGAAAGAGAGATAAGTAACATCTTGGAAGATAGCAATAGGAGTAGATCTTCTGCATCAGGTGAACTAGAA AATGGCTCGGATATTCTGCTGAAAGTAAGCTCACCTAGTTTTCTGTCAGGCATATGCAACAAGGTTCTGAAAGGCGCAACTTCGAATTTTCACTCAGAAA ATTTGATTGGGAAAGGGGGATGTAGCAGTGTGTACAAGGGGATTCTTCCAGATGGCAAGCCAGTGGCAGTGAAGGTTCAGAAATCATCCCAGAAAGCAAT GAAAGATCTTGCTCTTGAAGTTGAAATCATCTCCTCATTGAACCACAAGCACATCACACCTCTTGTTGATGTCTGCATCAAAGATGCTGATCTCATTTAC GTCTATGATTTTTTATCTAAAGGAAGCTTAGAGGAAAACTTACATGGAAAGAGCAAAGACAAATCTCCATTGTCATGGGAACTGAGGTTCGATATAGCTG TTAAAATTGCAGAAGCCCTATACTACCTGCACAACGAATGTTCTCGGCCTGTTATTCATAGAGATGTCAAGTCTTCAAACATTCTTCTCTCAGATGGATT TGAACCACAGTTGTCCGATTTCGGGCTGGCAATATGGGGACCGGCAACTACATCGTTTGTGACTCTAGGCGATGTTGTTGGAACATTTGGATATCTTGCT CCTGAATATTTCATGTATGGGAAAGTCAGCGACAAAATTGATGTCTATGCTTTTGGTGTAGTTCTACTTGAATTGCTATCAGGAAGAAAACCAATTAGTT CCGAGAACACCAAGAGCCAAGAGAGTTTGGTCTTGTGGGCAAAACCAATAATAGAGAGTGGGAATGCAATAGGCTTAGTGGATCCAAACTTGAATGGAAA CTTTGATGAGGTTCAAATGCAACGAATGGTTCTTGCAGCAACACACTGCATTACACGAGCAGCTAGACTACGTCCTAAAATGAGTGAGATACTGAAGCTC CTAAGAGGAGATAAAGAACCGGAAAAGTGGGTGAACCCTCAAAATAAGGATCTTCAGGATCCAGAAAACCAGGATAATGATGATGAAGTTTATCCAAACT CTAGTGCAGAGTCACATTTAAGTCTTGCATTGCTTGATGTTGATTATGATTCCACATCATTTAGTAGTTGGGAGCATGGAAATAATCTTTCTATTGAGGA GTATTTTAAAGATAGGTGGAGCCGATCATCAAGCTTCAATTAG
AA sequence Show only first row Show all	>Potri.009G134700.4 pacid=42770847 polypeptide=Potri.009G134700.4.p locus=Potri.009G134700 ID=Potri.009G134700.4.v4.1 annot-version=v4.1 MTVEELEAKATERRNVLVGIRIDSHSRELLSWAIAKVAEPGDCVVAVHVCGSSGHALRDKPLLDSYLEVYDGLCSMKKVGLSGQIAKGISVRRTLVREAK NYAAVAVIVGISSQAALRVWASTAKYCAKRLRPTTDIMAIHNGKIVFRRCNNNQLPGLGGDPKPSFNINENLSFREIQSEFGDSEAYTEISSFELLSRDE IGEIKDEVCSTVNARKKRSNSLFSGDFLDQRPGWPLLRRASSAIPLNLHSRKLSVVQWAMSLPDRSSQQDPRVSTAEEREISNILEDSNRSRSSASGELE NGSDILLKVSSPSFLSGICNKVLKGATSNFHSENLIGKGGCSSVYKGILPDGKPVAVKVQKSSQKAMKDLALEVEIISSLNHKHITPLVDVCIKDADLIY VYDFLSKGSLEENLHGKSKDKSPLSWELRFDIAVKIAEALYYLHNECSRPVIHRDVKSSNILLSDGFEPQLSDFGLAIWGPATTSFVTLGDVVGTFGYLA PEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISSENTKSQESLVLWAKPIIESGNAIGLVDPNLNGNFDEVQMQRMVLAATHCITRAARLRPKMSEILKL LRGDKEPEKWVNPQNKDLQDPENQDNDDEVYPNSSAESHLSLALLDVDYDSTSFSSWEHGNNLSIEEYFKDRWSRSSSFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16750			Protein kinase protein with ad...		Potri.009G134700 [exp]	0	1
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	6.32	0.8717
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.017G055400 [exp]	8.77	0.8455
AT3G59880			unknown protein		Potri.007G145500 [exp]	13.41	0.8616
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.002G186600 [exp]	16.24	0.8431	Pt-WRKY47.2
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	18.00	0.8575
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	21.16	0.8538
AT1G31130			unknown protein		Potri.002G074200 [exp]	24.06	0.8689
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	27.00	0.8510
AT3G59880			unknown protein		Potri.017G002100 [exp]	27.92	0.8135
AT3G19990			unknown protein		Potri.007G001200 [exp]	28.53	0.7933

Compare expression of checked genes

Potri.009G134700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.