Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35940 44 / 8e-05 unknown protein AT2G17787 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019200 [exp] 56 / 7e-09 AT1G20100 71 / 6e-14 unknown protein Potri.005G242400 [exp] 47 / 7e-06 AT1G20100 51 / 3e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013567 [exp] 46 / 2e-05 AT2G17787 45 / 3e-05 unknown protein Lus10034539 [exp] 42 / 0.0004 AT1G75860 56 / 1e-08 unknown protein Lus10017274 [exp] 41 / 0.0008 AT2G17787 44 / 7e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G134800.1 pacid=42772402 polypeptide=Potri.009G134800.1.p locus=Potri.009G134800 ID=Potri.009G134800.1.v4.1 annot-version=v4.1 ATGTCAAGGTGTATACGGTTCCCTCCACCAGGGTACGTGTGGAACGGAGTGAAAGGGGAAGCCTTGATAGAGTTGATTAAGGTCAGGAGAGAAAAGGCCG AGGTTGAGAAGCGAAGGAAGAAAGAGGAGAAGAAGAAAGAGAAGAGGAGGCAAAAAATCGAAGAAGGATTGGAGGGGGGACAGATTAAGAAGAAAAGGTA TAATCCTCACAGAAGGCAGGTGCAACACCGGAGAGAGGATGGCGATGTAAGCAGCTACTATCTAGCGAAGAATGAACATGAATTTCGAAGAACAGAGAGA ACTAGTCTTGCCGAAGAGCTCAAGCAGCCTTCAATATCAGACAGCTTATATGACTCTTTTGGCACCAGCCAGAGTGCCGAGAGGAAGGGGACTGAAAGGT GCCAAAGTCATGGAAGCGTTTTTTGGATTGATATCCAATTGCAAGGGCATGAAGATCAAGATCTGGTGTTTGGTAAACCAGTGTGCTCTATTACAGCAAT GGATTTTCTTGTCCAAGAGAAATCTGAATTGCCCAAAAGCTGCTCCGAAGAGGAGTTCTTTTCTACCTGCAGTGAGTCCACAACCACTGCCTTTGAATCG GATAGACCTGGTGTTGAGTTGTGCCATTCATGTTCTCAAACTGAGCTCGTAAGAGATAGGAAGGCTGCGTCGGCTCTTATATCCCAATACTCTGGAAGTG GCTTGCAGCATACAGAATTAAACTTTTGGGAGCTAGATGTAAACTGGATTCCCCTTCCCATGAAGAGCGGGAACCCGGAATTTGATAATCTAGTTTGGCT CTACGAGAGGAAGCCCGAGAGACTGCCTAGAAGTGATTACACTAAAATCTATAGAGCTAGCAATGATAGATTGTCTCACCCGATTTCTTCTCTATACCCA ACAGCTCAGTATTTGGCCCAAGCTGAGATATATGCCTTGCCATTTACAATACCATTCTAA
AA sequence Show only first row Show all	>Potri.009G134800.1 pacid=42772402 polypeptide=Potri.009G134800.1.p locus=Potri.009G134800 ID=Potri.009G134800.1.v4.1 annot-version=v4.1 MSRCIRFPPPGYVWNGVKGEALIELIKVRREKAEVEKRRKKEEKKKEKRRQKIEEGLEGGQIKKKRYNPHRRQVQHRREDGDVSSYYLAKNEHEFRRTER TSLAEELKQPSISDSLYDSFGTSQSAERKGTERCQSHGSVFWIDIQLQGHEDQDLVFGKPVCSITAMDFLVQEKSELPKSCSEEEFFSTCSESTTTAFES DRPGVELCHSCSQTELVRDRKAASALISQYSGSGLQHTELNFWELDVNWIPLPMKSGNPEFDNLVWLYERKPERLPRSDYTKIYRASNDRLSHPISSLYP TAQYLAQAEIYALPFTIPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35940			unknown protein		Potri.009G134800 [exp]	0	1
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	14.62	0.7389
AT1G55915			zinc ion binding (.1)		Potri.008G009700 [exp]	18.70	0.6852
AT4G30330			Small nuclear ribonucleoprotei...		Potri.018G096200 [exp]	19.26	0.7068
					Potri.010G122150 [exp]	24.37	0.7330
AT4G36240	GATA	GATA7	GATA transcription factor 7 (....		Potri.005G066100 [exp]	26.17	0.7181
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	28.49	0.7236
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237000 [exp]	29.12	0.6005
					Potri.001G305200 [exp]	31.55	0.5411
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	35.56	0.6992
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	37.70	0.7122

Compare expression of checked genes

Potri.009G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.