Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35040 291 / 2e-99 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G16770 283 / 2e-96 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 136 / 5e-39 bZIP ATBZIP24 basic leucine zipper 24 (.1.2) AT5G38800 41 / 0.0003 bZIP ATBZIP43 basic leucine-zipper 43 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175200 [exp] 416 / 2e-148 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G204400 [exp] 117 / 6e-32 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G020200 [exp] 107 / 2e-27 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027847 [exp] 301 / 1e-102 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10005073 [exp] 293 / 3e-99 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014121 [exp] 253 / 6e-85 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019788 [exp] 205 / 3e-66 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10016368 [exp] 124 / 2e-35 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019756 [exp] 70 / 4e-15 AT4G35040 79 / 4e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF07716 [poplar] [flax] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.009G134900.1 pacid=42772549 polypeptide=Potri.009G134900.1.p locus=Potri.009G134900 ID=Potri.009G134900.1.v4.1 annot-version=v4.1 ATGGACGATGGAGAGTTAGATTATTCAAACCAAGAATTGTTTTTGAGTCCGAATATGGATGATCTTCCAAGCAGTTGTTCTTATGGTTTCTTGGATGAGC TACTGATGGATACTCCTCATGCTTGTACTCATACACACACATGCAATCCTCCTGGTCCCGATAATCCTCACACACACGTTTGCTTTCATGCACATACAAA ACTTTTGTCCTCTTCTGAGGACAAGGTTGAGAGTGAAGACACTGCGGAGTCCATAGAGAAAAAGTCAAAGAAACGGCCATTGGGCAATAGGGAGGCTGTC CGAAAGTATAGGGAGAAGAAGAAGGCAAAGGCTGCCTCTTTGGAGGATGAAGTTAAGCGTTTGCGAGCTTTGAACCAACAGTTACTAAAGAGGCTGCAAG GACAGGCTGCATTGGAGGCAGAGGTTGCAAGGCTCAAGTGTTTACTGGTAGACATCAGGGGGAGAATTGAAGGGGAGATTGGATCTTTTCCATATCAGAA ATCAGCTAATAATGTGAATTTGACCAATTTTCCTGGTTCTCTTGTGATGAATCCATGTAATATAAGGTGTGATGATCAGGTTTATTGCCAGCATCCTGGG TTGGATGGCAAAGGTGGAGAAGGTGAAGCATTGAAAGGACAAGGGTTTAACAGTTGTGAGTTTGAGAACCTTCAGTGTATGGAGTATCAGAATTCAGGAA TGAGAGACTTACCTGGGTGTAGCATTGGGAATGAGGAAATGAATGGCAATTCTTCCAGTGCAAACAAGAGGAAAGGAGGGGCTTGTGAAGCAACAGTAAG TTGA
AA sequence Show only first row Show all	>Potri.009G134900.1 pacid=42772549 polypeptide=Potri.009G134900.1.p locus=Potri.009G134900 ID=Potri.009G134900.1.v4.1 annot-version=v4.1 MDDGELDYSNQELFLSPNMDDLPSSCSYGFLDELLMDTPHACTHTHTCNPPGPDNPHTHVCFHAHTKLLSSSEDKVESEDTAESIEKKSKKRPLGNREAV RKYREKKKAKAASLEDEVKRLRALNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKSANNVNLTNFPGSLVMNPCNIRCDDQVYCQHPG LDGKGGEGEALKGQGFNSCEFENLQCMEYQNSGMRDLPGCSIGNEEMNGNSSSANKRKGGACEATVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Potri.009G134900 [exp]	0	1
AT1G50020			unknown protein		Potri.009G084800 [exp]	7.28	0.9245
AT2G41000			Chaperone DnaJ-domain superfam...		Potri.006G024700 [exp]	14.69	0.9107
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	15.96	0.9037
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Potri.012G088600 [exp]	17.66	0.8893
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	19.36	0.9190
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088086 [exp]	19.44	0.9114
AT1G68140			Protein of unknown function (D...		Potri.001G208800 [exp]	19.74	0.8976
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Potri.014G117700 [exp]	21.07	0.9164
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031800 [exp]	21.63	0.9097
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031700 [exp]	24.81	0.8869	Pt-CYP94.6

Compare expression of checked genes

Potri.009G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.