Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NFC903,Pt-MSI2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16780 612 / 0 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 605 / 0 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 470 / 4e-165 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G19520 229 / 4e-70 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 210 / 7e-63 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G19540 125 / 2e-31 Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 89 / 2e-19 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G35370 74 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT3G63460 72 / 5e-13 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT5G08390 70 / 1e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175300 [exp] 795 / 0 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 468 / 2e-164 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 466 / 2e-163 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G151800 [exp] 225 / 2e-68 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 221 / 9e-67 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 213 / 4e-64 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 119 / 2e-29 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 117 / 1e-28 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 91 / 3e-20 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005074 [exp] 658 / 0 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 644 / 0 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020916 [exp] 464 / 1e-162 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 462 / 7e-162 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 422 / 1e-146 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 417 / 2e-144 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027632 [exp] 214 / 4e-64 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 171 / 3e-48 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 114 / 1e-27 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 113 / 4e-27 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF12265 [poplar] [flax] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Potri.009G135100.1 pacid=42771662 polypeptide=Potri.009G135100.1.p locus=Potri.009G135100 ID=Potri.009G135100.1.v4.1 annot-version=v4.1 ATGGCACCGGTGGAGGATGATCAGGATGTGGGACAAGATCAACTTGATGAAGAATTCTCTGTATGGAAGAAGAACACGCCATTTCTCTATGACTTCGTCA TCTCTCACCCTCTCGAGTGGCCATCTCTAACCGTCCAATGGGTACCACTCGCAACTCCACTGCCTCACTCAACCGACCCGTCGTCTTTCTCCGTTCACAA GCTGGTTCTTGGGACTCACACTTCTGATGATTTCCCCAACTATCTCTTGATTGCTGATGCTGTGCTGCCCACTTCGGTCGCCGAAGCCAAGATTGACGCT AGTGGCAGTTCTACGAATTCTGTGATTCCTAAGGTGGAAATTACACAGAAGATTCGTGTTGATGGAGAGGTGAACAGGGCACGAAGTATGCCACAAAATC CTGCTATTGTTGGTGCAAAGACTAGTGGTTGCGAGGTTTATGTGTTTGATTCTACCAAACAGGCAGAGAGGAAACAAAGGGATGGCTGTGATCCGGATTT AAGGTTAACTGGCCATGATAAAGAAGGGTATGGATTGTCGTGGAGTCCATTTAAGCAGGGTTATCTTGTGAGTGGTTCACATGATAATAGAATATGTTTG TGGGATGTGTCTGCCGTTGCTCAAGATAAAGTGCTTGGTGCGTTGCAAGTTTATGAGGCCCATGAAAGTGTGGTTGAAGATGTGTCATGGCACTTGAAGA ATGAAAATTTGTTTGGTTCTGTGGGGGATGATTGTCAATTAATTATCTGGGACTTGCGCACAAATCAAATCCAACATTCTGTTAAAGCTCATGAGAAAGA GATTAACTATCTATCGTTCAATCCATACAATGAATGGATTCTGGCCACAGCTTCTTCTGATGCAACTGTTGGTCTGTTTGATATGCGGAAGCTGACTGTA CCACTGCATGCTTTACGTAGTAACACAGAAGAGGTATTCCAAGTAGAATGGGATCCTAATCATGAAACAGTGCTAGCATCCTCTGCTGATGACAGAAGGT TGAACGTTTGGGATCTGAACAGGATTGGTGAGGAGCAGTTAGAGTTAGATGCTGACGACGGCCCACCAGAACTTCTTTTCTCTCACGGAGGTCACAAGGC CAAGATATCAGATTTTTCATGGAATAAAAATGAACCATGGGTCATCTCAAGCGTGGCTGATGACAACACACTTCAAGTGTGGCAAATGGCTGAAAGTATC TATCGTGATGAAGATGACATAGCATCTGCTGAGGAGCCACCTCTAGCTGAGAAATGA
AA sequence Show only first row Show all	>Potri.009G135100.1 pacid=42771662 polypeptide=Potri.009G135100.1.p locus=Potri.009G135100 ID=Potri.009G135100.1.v4.1 annot-version=v4.1 MAPVEDDQDVGQDQLDEEFSVWKKNTPFLYDFVISHPLEWPSLTVQWVPLATPLPHSTDPSSFSVHKLVLGTHTSDDFPNYLLIADAVLPTSVAEAKIDA SGSSTNSVIPKVEITQKIRVDGEVNRARSMPQNPAIVGAKTSGCEVYVFDSTKQAERKQRDGCDPDLRLTGHDKEGYGLSWSPFKQGYLVSGSHDNRICL WDVSAVAQDKVLGALQVYEAHESVVEDVSWHLKNENLFGSVGDDCQLIIWDLRTNQIQHSVKAHEKEINYLSFNPYNEWILATASSDATVGLFDMRKLTV PLHALRSNTEEVFQVEWDPNHETVLASSADDRRLNVWDLNRIGEEQLELDADDGPPELLFSHGGHKAKISDFSWNKNEPWVISSVADDNTLQVWQMAESI YRDEDDIASAEEPPLAEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	0	1	NFC903,Pt-MSI2.1
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	4.89	0.8361
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.007G076700 [exp]	4.89	0.8732
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	8.00	0.8658	DMT901,Pt-MET1.2
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	8.36	0.8426
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	8.48	0.8322
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.004G100500 [exp]	10.63	0.7369
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	16.43	0.7952
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	16.79	0.8435
AT2G27775			unknown protein		Potri.009G148400 [exp]	18.70	0.7966
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	19.97	0.8353	CPE902,Pt-SMC2.2

Compare expression of checked genes

Potri.009G135100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.