Plant FIBer expression Database

Potri.009G135600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16800 358 / 2e-122 high-affinity nickel-transport family protein (.1)
AT4G35080 337 / 3e-114 high-affinity nickel-transport family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G175700
[exp]
541 / 0 AT2G16800 378 / 2e-130 high-affinity nickel-transport family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019792
[exp]
409 / 3e-142 AT2G16800 422 / 2e-147 high-affinity nickel-transport family protein (.1)
Lus10014116
[exp]
382 / 7e-132 AT2G16800 411 / 4e-143 high-affinity nickel-transport family protein (.1)
Lus10027851
[exp]
341 / 1e-115 AT2G16800 386 / 1e-133 high-affinity nickel-transport family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0292 LysE PF13386 DsbD_2 Cytochrome C biogenesis protein transmembrane region
Representative CDS sequence
>Potri.009G135600.1 pacid=42771759 polypeptide=Potri.009G135600.1.p locus=Potri.009G135600 ID=Potri.009G135600.1.v4.1 annot-version=v4.1
ATGGAGAGGCTTCTGTATTCTTCTTCTCCTACTCCTCTAAAAACCCACTTCAAAAAGCCCACTCCTTTGCTTCCTAGACTCTGCAAACTTGAGTTACCGA
AACCTGGTTTTCCCTCTTTGACAAGGCCGGAGTTCAGGAGAGTCAACTCGGTCTCTTGCAAACATGAGAACCCATCAAACCCATTTATTAAATTGCCATC
CCTGTCTCCTCTTAAGGTTGATTCATCATCTGGGTCGACGCCAAAATCCCACCTTGTCAAACAGATCGTTGATGGAGTTTCTGTCAAGTCTAAGGCAGCT
ACTGTTGGGATATTCATGGTAGTTTCTGCTCTCATCATGTTAATCCACCCAGTTTTCGCATTGCCAGCTTTTGCAACCTTCCAAACTGCTGCCCAGACTG
GGGGGCCTGCTGCTGCCGCAGGAGGGGCAAAATTTATGCGAACTGAACTACTGACCAGTGCTTGGGCTGGTTTATTTGCTGGTTGCTTGCACACACTGTC
AGGGCCTGACCACCTTGCTGCTTTGGCTCCACTCTCAATCGGTCGATCCCGGATGGAAAGTGCTGCTGTTGGAGCTCTTTGGGGTTGTGGCCACGATGCA
GGTCAGGTCATATTTGGCTTGCTATTTCTACTGCTGAAGGATCGACTCCATATTGAAATCATCAGAACTTGGGGCACAAGAGTGGTCGGTCTAACTCTAC
TTGTTATTGGTGCTATGGGTATTAAGGAGGCATCAGAAGTCCCAACTCCATGTGTTGCCTTAGAAAATGGTGAGTGTGATGTTAGTGCTTATGAAGCATT
AGAAACCCCAACAGTAGGGAAGAAGAAAAAGATTGGTTTTGCTACTTTTGCTACCGGTATTGTCCACGGACTACAACCAGATGCATTGATGATGGTGTTG
CCTGCACTTGCATTGCCTTCTCGGGTGGCTGGGGCTGCATTTCTGATCATGTTCTTGTTTGGGACTGTGGTTGCCATGGGTAGCTACACGGTATTTATAG
GGTCATGTAGTGAAGCATTAAAGGACAGAGTACCCAGAATAACTGAGAAACTCACATGGGTTTCGTCCCTGATAGCCATTGCCCTTGGCCTTGGTATTAT
CGTTAGCCAGTTGTTCGGGTTCAGTTTATACTGA
AA sequence
>Potri.009G135600.1 pacid=42771759 polypeptide=Potri.009G135600.1.p locus=Potri.009G135600 ID=Potri.009G135600.1.v4.1 annot-version=v4.1
MERLLYSSSPTPLKTHFKKPTPLLPRLCKLELPKPGFPSLTRPEFRRVNSVSCKHENPSNPFIKLPSLSPLKVDSSSGSTPKSHLVKQIVDGVSVKSKAA
TVGIFMVVSALIMLIHPVFALPAFATFQTAAQTGGPAAAAGGAKFMRTELLTSAWAGLFAGCLHTLSGPDHLAALAPLSIGRSRMESAAVGALWGCGHDA
GQVIFGLLFLLLKDRLHIEIIRTWGTRVVGLTLLVIGAMGIKEASEVPTPCVALENGECDVSAYEALETPTVGKKKKIGFATFATGIVHGLQPDALMMVL
PALALPSRVAGAAFLIMFLFGTVVAMGSYTVFIGSCSEALKDRVPRITEKLTWVSSLIAIALGLGIIVSQLFGFSLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16800 high-affinity nickel-transport... Potri.009G135600
[exp]
0 1
AT1G53670 MSRB1, ATMSRB1 methionine sulfoxide reductase... Potri.011G114300
[exp]
3.16 0.9289
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.017G032500
[exp]
10.86 0.9180 ZOG1.12
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G017232
[exp]
13.74 0.9179
AT5G59030 COPT1 copper transporter 1 (.1) Potri.009G038800
[exp]
19.23 0.9101 COPT1.2
AT2G24390 AIG2-like (avirulence induced ... Potri.018G003000
[exp]
23.23 0.9046
AT5G04830 Nuclear transport factor 2 (NT... Potri.010G241700
[exp]
23.87 0.8874
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G017166
[exp]
24.73 0.9063
AT1G48450 Protein of unknown function (D... Potri.015G031200
[exp]
26.83 0.9078
AT4G23990 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE... Potri.003G142301
[exp]
29.39 0.9034
AT5G55710 AtTic20-V translocon at the inner envelo... Potri.004G191700
[exp]
29.93 0.9136

Potri.009G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.