Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16910 461 / 1e-156 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 116 / 1e-27 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G12860 112 / 4e-26 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10610 107 / 1e-24 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 93 / 5e-21 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21330 86 / 4e-19 bHLH bHLH022, DYT1 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G28160 87 / 1e-18 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G46760 84 / 8e-17 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G29930 79 / 2e-16 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G46510 82 / 3e-16 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189600 [exp] 261 / 2e-80 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 119 / 8e-31 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G105200 [exp] 119 / 3e-28 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.012G106000 [exp] 118 / 6e-28 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.018G141800 [exp] 108 / 2e-26 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141600 [exp] 96 / 3e-22 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 94 / 3e-21 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029800 [exp] 90 / 2e-20 AT4G21330 153 / 8e-47 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141700 [exp] 88 / 2e-19 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042395 [exp] 376 / 6e-124 AT2G16910 323 / 1e-103 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026278 [exp] 170 / 5e-46 AT2G16910 233 / 2e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030880 [exp] 123 / 4e-30 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 120 / 3e-29 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10032542 [exp] 119 / 3e-28 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10043199 [exp] 119 / 3e-28 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10007618 [exp] 103 / 2e-25 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018395 [exp] 96 / 4e-22 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006951 [exp] 92 / 5e-21 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10020074 [exp] 90 / 3e-20 AT4G21330 116 / 3e-32 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G136300.1 pacid=42771876 polypeptide=Potri.009G136300.1.p locus=Potri.009G136300 ID=Potri.009G136300.1.v4.1 annot-version=v4.1 ATGAGGTACCCTTATCAGCCAGGTAACATCATGAATGTGGTACAAAACCTCATGGAGAGACTGAGGCCTCTTGTGGGTGTAAAAGGCTGGGATTATTGTG TTCTTTGGAAACTGAGTGATGATCGAAGGTATATTGAATTGATGGATTGTTGTTGCGCTGGGACTGAGGCCACTCAAAATGGTGGAGAAGACCTTCAGTT TCCTGTTTCTGCAGTCCTTCCTTGCAGGGATGTCATGTTTCAGCACCCAGGAACTAAATCTTGTGAACTTCTTGCTCAACTTCCTTCTTCAATGCCCCTA AACTCAGGATTTCATGCACAGACCCTGAGCTCAAACCTGCCTAGGTGGTTAAACTTCTCTAGTAGCTCAGATTCAAATGTTCTTGAGGAAACAGTTGGAA CTAGGGCCCTGATTCCGGTGCCAGGAGGACTAATGGAACTGTTCATTGCTAAACAAGTACCTGAAGATCAACATGTCATAGATGTTGTAACATCTCAATG CAACTTCCTAATGGAACAGGAAGCCATGATCAACTCAACCAACATGGATTCAAGTTTATCAATTGATGTGAATGTTATGAGTGAAAACCAATCAAAGCCA TTTCTTGCTAATGAAAATGAACAAGAGGATCATCACAGTTTGAATATTCCATATGATACCTCCCTTGATAGACTCCACATGTCTAGTTCTCCAATGAACA ACTTCATGCACCAGTTCAATTACAGCACCGACGAAACCAAAACAAAAGGCGATCTCTTTCAAGGAGTAGAGAGTGGGCTACAAGATATGGATGATTTGCA GAAGTCCATGATGGCTAATGCAGAAAGCACGCAGATGCAATATATGGAGTCAGGTTTAACAACCAAGGATCAACATGGAAATGACAAAGAATCAATAAAA CTAGAGAATGGGCCATCAGCAGAATATTCACACTCGGATTGCAACGATGATGAGGATGATGCAAAGTATCGGAGGAGGACTGGGAAAGGACCTCAATCAA AAAACCTTGTTGCTGAGAGGAAAAGGAGGAAGAAGCTTAATGATAGGCTCTATGCTCTCCGGTCCTTGGTTCCCAACATTTCAAAGCTGGATAGGGCTTC CATACTTGGAGATGCGATCGAATTTGTGAAAGAGCTTCAAAAGGAAGCGAAAGAACTCCAGGATGAGCTTGAAGAGAATTCAGAAGATGAGGGTGCTAAA AACGGTAACAACAACAATATGCCACCAGAAATTCTGAACCAAAATGGAGTTAATCTTGGTGCATACAGGTCTGATTATGCTGTGAATGGATTTCATGTGG AAGCATCAGGCATTAGTACTGTTTCAAAACAAAACCAAGACTCAGAAAATTCTCACGACAAGGGACATCAAATGGAGGCGCAAGTGGAAGTTGCTCAGAT AGATGGGAATGAGTTCTTTGTTAAGGTATTCTGTGAGCACAAGCCTGGAGGGTTTGTGAGATTAATGGAGGCTTTGGATTCTCTTGGCTTAGAAGTTACA AATGCTAATGTGACCAGCAATAGAGGCCTGGTTTCTAATGTCTTAAAAGTAGAGCAGAAGGACAGTGAAATGGTTCAAGCAGACTATGTAAGGGACTCTT TGCTGGAGTTAACAAGAGACCCACCAAGAGCGTGGCCTGAAATGCCTAAAGCATCAGAGATTTGCTGTAGTGGGATGGACTATCCTCACCATGATCACCA CCAGCACCACCTGCAGAATGGCCACATGAATTACAACCACCATCACCTCCACCACCTTTGA
AA sequence Show only first row Show all	>Potri.009G136300.1 pacid=42771876 polypeptide=Potri.009G136300.1.p locus=Potri.009G136300 ID=Potri.009G136300.1.v4.1 annot-version=v4.1 MRYPYQPGNIMNVVQNLMERLRPLVGVKGWDYCVLWKLSDDRRYIELMDCCCAGTEATQNGGEDLQFPVSAVLPCRDVMFQHPGTKSCELLAQLPSSMPL NSGFHAQTLSSNLPRWLNFSSSSDSNVLEETVGTRALIPVPGGLMELFIAKQVPEDQHVIDVVTSQCNFLMEQEAMINSTNMDSSLSIDVNVMSENQSKP FLANENEQEDHHSLNIPYDTSLDRLHMSSSPMNNFMHQFNYSTDETKTKGDLFQGVESGLQDMDDLQKSMMANAESTQMQYMESGLTTKDQHGNDKESIK LENGPSAEYSHSDCNDDEDDAKYRRRTGKGPQSKNLVAERKRRKKLNDRLYALRSLVPNISKLDRASILGDAIEFVKELQKEAKELQDELEENSEDEGAK NGNNNNMPPEILNQNGVNLGAYRSDYAVNGFHVEASGISTVSKQNQDSENSHDKGHQMEAQVEVAQIDGNEFFVKVFCEHKPGGFVRLMEALDSLGLEVT NANVTSNRGLVSNVLKVEQKDSEMVQADYVRDSLLELTRDPPRAWPEMPKASEICCSGMDYPHHDHHQHHLQNGHMNYNHHHLHHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Potri.009G136300 [exp]	0	1
AT5G19290			alpha/beta-Hydrolases superfam...		Potri.008G040000 [exp]	12.88	0.7047
					Potri.002G159350 [exp]	34.29	0.6326
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105000 [exp]	47.94	0.6561
AT4G13450			Adenine nucleotide alpha hydro...		Potri.010G064800 [exp]	50.06	0.6368
					Potri.016G095001 [exp]	56.92	0.5682
AT5G57500			Galactosyltransferase family p...		Potri.007G131000 [exp]	65.45	0.6479
AT1G24520		BCP1	homolog of Brassica campestris...		Potri.012G095900 [exp]	79.45	0.6137
					Potri.013G094950 [exp]	88.56	0.5840

Compare expression of checked genes

Potri.009G136300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.