Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16900 135 / 9e-35 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) AT2G20960 134 / 4e-33 PEARLI4 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT4G35110 130 / 6e-33 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT4G38560 125 / 1e-30 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2) AT4G38550 124 / 7e-30 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT5G11140 112 / 6e-28 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1) AT2G20950 113 / 2e-26 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) AT2G16860 55 / 5e-08 GCIP-interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176100 [exp] 710 / 0 AT2G16900 154 / 3e-42 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.004G176200 [exp] 56 / 2e-08 AT2G16860 408 / 2e-144 GCIP-interacting family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042396 [exp] 304 / 5e-98 AT4G35110 190 / 6e-56 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10026277 [exp] 269 / 3e-84 AT4G35110 187 / 6e-55 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10012164 [exp] 107 / 2e-24 AT2G16900 122 / 1e-30 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Lus10007582 [exp] 103 / 4e-23 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10028463 [exp] 59 / 5e-09 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 59 / 5e-09 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10039220 [exp] 47 / 3e-05 AT2G16860 421 / 1e-149 GCIP-interacting family protein (.1) Lus10027464 [exp] 44 / 0.0003 AT2G16860 416 / 1e-147 GCIP-interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05278 [poplar] [flax] PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI 4)
Representative CDS sequence Show only first row Show all	>Potri.009G136400.12 pacid=42771306 polypeptide=Potri.009G136400.12.p locus=Potri.009G136400 ID=Potri.009G136400.12.v4.1 annot-version=v4.1 ATGGCTGAGAATGGAAGGGTACATCCAGATTGTGTCAATGCTGCCAATCCTTACCATGAATGTGGTGTAGCTTGCCTTGAAAAGATTTCTCAAGGCCAGG GAAGGAAGGAGAAGAAAAAGTCAGATTATCATAATGGTGTAAATGGGAGTTGGCTTAGCAAAAACATGGATGGAGAAAGAAGAGCACAGCCAACTTGCCC CAAAGCCTCTAATCCTTACCATAAATGTGAGGAATTTTGTTCTAATAGAACTGCTGAGCCTAAACCAGGGGGGGTTAAAAAAGAAACAGGAGGAGCCAAG CCATGCCCCAAAGCATCTAATCCTTACCATAAATGTGAAGAATTTTGTTCTAACAGAACAGCTGATGCCAATCCTCGTGGGGTTAAAAAACAATCAGAAA GAGCACAGCCATGCCCCAGAGCATCTAACCCTTCCCATAAATGTGACGAATTTTGTTCTAACAGAACTTCGGAGGCCAATCCTCAGGGGGTTGAAAAAGA ATCAGGTTCCTTTCTTGATACTGCTTTAAGCTTTGGTAGAAAAAAGAAGGAATCTGAATCTCAGCAGAACTCTCCTCGAGCAGTTAACAATGCCCCTGCT GTAAAAGGAGCCGTTAACAATGCCCCTGCTGTAAAAGCAGTTCGCCGTGCTCCACCATCTCCATTGATTCTTCCTACCAAAAAGGATGAGGAACCAGAGA ATAGTCGATCTTTTTCCTCATCTCAACCACATTCTGATGAAAGTTACTCCGAAGACCATGCTCTTGACAAGGTGCCAGTTCAATCCCCTGGACCAATGCA TGTGTCTGGGAAAATCACGCCTGATCCTCCGAAAAGCCCTTCAAAGATTAGTTTGGCCTGCTATAAAATTCCAACACCAGCTGAACCACAACAGAATGGA AAGCTCCATGGTTCGCCAAAGGCTGCCCCATATCCTTCTGCTAACCATGAGGGAAGAGTCACTAATGGTCCCATTACCGAGTACTTGAACTTCAGCTTTT CAGGCATTTCTCGTGCCTCAGAAGGGAGTGACGGGGAAGAGGTTCAATCTGTTGTTTCTGATTCCTGTGTGTCAGTAGGAAAATATCACGTGAGAGCAAA TGTTGCCTCTATTCTACAGTTAATCTTTGAAAAGTATGGAGATATAGCCACAGGCAGTCGATTGGAATCAGCTTCCATGCGAGCTTATTATCTAGAGTGC CTGTGCTTTGTGGTTCAGGAGTTGCAGTGCACTCCTTTCAAGCAGTTGACAAAATCCAAAGTTAGAGAAATGTTGGCTGTTCTGAAGGACGTTGAATCCG CACAAATTGATGTTAGTTGGCTACGTGATATACTAAATGATCTGGCTGAAGGCATGGAGCTCAGTAATCAGCATCAAGCTGCGGAGGAATCAAAATCCAA CTGCGATGATCTTATAGAGTCAAAAAAGAAAGAACTAGAATCCATGATGGAGGATCTAGCTCTCAAAGAGAAAGCAGTTGCTGATGCCAAGGCACAAATC ACTGAAACAAGAACTCACCTGAGTAATCTAGAGCTCGAATCTTCCAAGTTAGGTGAGACTATTTCATCCATCCAATCGAGGGTCGAAAAGTTTCATGAAA AACCGTTGGCAGATGAGATCCTGTAA
AA sequence Show only first row Show all	>Potri.009G136400.12 pacid=42771306 polypeptide=Potri.009G136400.12.p locus=Potri.009G136400 ID=Potri.009G136400.12.v4.1 annot-version=v4.1 MAENGRVHPDCVNAANPYHECGVACLEKISQGQGRKEKKKSDYHNGVNGSWLSKNMDGERRAQPTCPKASNPYHKCEEFCSNRTAEPKPGGVKKETGGAK PCPKASNPYHKCEEFCSNRTADANPRGVKKQSERAQPCPRASNPSHKCDEFCSNRTSEANPQGVEKESGSFLDTALSFGRKKKESESQQNSPRAVNNAPA VKGAVNNAPAVKAVRRAPPSPLILPTKKDEEPENSRSFSSSQPHSDESYSEDHALDKVPVQSPGPMHVSGKITPDPPKSPSKISLACYKIPTPAEPQQNG KLHGSPKAAPYPSANHEGRVTNGPITEYLNFSFSGISRASEGSDGEEVQSVVSDSCVSVGKYHVRANVASILQLIFEKYGDIATGSRLESASMRAYYLEC LCFVVQELQCTPFKQLTKSKVREMLAVLKDVESAQIDVSWLRDILNDLAEGMELSNQHQAAEESKSNCDDLIESKKKELESMMEDLALKEKAVADAKAQI TETRTHLSNLELESSKLGETISSIQSRVEKFHEKPLADEIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16900			Arabidopsis phospholipase-like...		Potri.009G136400 [exp]	0	1
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Potri.004G034100 [exp]	13.56	0.8428
AT1G77810			Galactosyltransferase family p...		Potri.002G089800 [exp]	15.81	0.8675
AT5G38210			Protein kinase family protein ...		Potri.017G118250 [exp]	20.97	0.8641
					Potri.001G125100 [exp]	23.49	0.8266
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.009G010350 [exp]	33.94	0.8615
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008100 [exp]	38.79	0.8620
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.006G022000 [exp]	62.20	0.8532
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	66.17	0.8392	Pt-NAC2.1,NAC049
AT3G57810			Cysteine proteinases superfami...		Potri.010G234300 [exp]	68.81	0.7947
					Potri.019G017850 [exp]	84.55	0.8418

Compare expression of checked genes

Potri.009G136400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.