Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02390 75 / 5e-16 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) AT2G31320 41 / 0.0002 ATPARP2 poly(ADP-ribose) polymerase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128200 [exp] 97 / 1e-23 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 62 / 1e-11 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.002G041300 [exp] 40 / 0.0003 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030363 [exp] 126 / 3e-34 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10000104 [exp] 84 / 9e-22 AT4G02390 120 / 1e-33 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10007882 [exp] 83 / 6e-19 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10033871 [exp] 42 / 0.0001 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0084 [poplar] [flax] ADP-ribosyl PF00644 [poplar] [flax] PARP Poly(ADP-ribose) polymerase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.009G136501.1 pacid=42771229 polypeptide=Potri.009G136501.1.p locus=Potri.009G136501 ID=Potri.009G136501.1.v4.1 annot-version=v4.1 ATGCAGACACTAACTGTGGGTGTTGGTGATATCGGCGTATGCGAAGACCCCTTGTATTCTTATTATAACCGGCTACATTATGAATTGACTCCAGTTGAGG TTCATTCTGAGGAATCTGCAATGATTGCCATGTATTTGCAGAATAAACATGCAGCAACACGTTCACAGTATCCTGCTGATATTGATAAAATATTCAGGGT CTCAAGAGAGGGTGAAAATGAACGTAACAGAGCGTTGATCTTGGAGACATGGCTGAGCTATTATATGCAAAAAAATGACGTTGATAAGTTACCACGGGGG AAGCTAAGCACGAAAGGAGTTGGTGGAACTGCTCCAAATCTTTCAGATGCCAAGACACTTGATGATGGTGCTGTTGTTCCCCTTGGGAAGCCCGAAGAGC AACAAGGCTCAAAGGTTGAACAAACAAAAGTGATTTGCGGTGCAATCAGTAACATAGTCTACAACGTGGATCAGATTCGGATGCGATAA
AA sequence Show only first row Show all	>Potri.009G136501.1 pacid=42771229 polypeptide=Potri.009G136501.1.p locus=Potri.009G136501 ID=Potri.009G136501.1.v4.1 annot-version=v4.1 MQTLTVGVGDIGVCEDPLYSYYNRLHYELTPVEVHSEESAMIAMYLQNKHAATRSQYPADIDKIFRVSREGENERNRALILETWLSYYMQKNDVDKLPRG KLSTKGVGGTAPNLSDAKTLDDGAVVPLGKPEEQQGSKVEQTKVICGAISNIVYNVDQIRMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.009G136501 [exp]	0	1
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G177400 [exp]	2.44	0.7130
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	4.24	0.7727
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	12.36	0.6949
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	13.22	0.7103
AT1G29290			unknown protein		Potri.011G108101 [exp]	14.69	0.7048
AT2G21210			SAUR-like auxin-responsive pro...		Potri.009G127300 [exp]	19.49	0.5702
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	20.78	0.6642
					Potri.018G036850 [exp]	26.49	0.5487
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.001G048200 [exp]	26.83	0.6814
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Potri.003G119700 [exp]	29.49	0.5447

Compare expression of checked genes

Potri.009G136501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.