Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35100 493 / 1e-178 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G16850 489 / 2e-177 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G39010 438 / 8e-157 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT3G54820 436 / 4e-156 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G37170 432 / 2e-154 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G37180 430 / 9e-154 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT3G53420 427 / 2e-152 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT5G60660 426 / 5e-152 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT4G00430 390 / 7e-138 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 383 / 4e-135 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176300 [exp] 511 / 0 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.008G039600 [exp] 453 / 8e-163 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.010G222700 [exp] 451 / 5e-162 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.006G128200 [exp] 451 / 6e-162 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 449 / 2e-161 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 449 / 2e-161 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 434 / 2e-155 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.005G109300 [exp] 408 / 2e-145 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Potri.016G113300 [exp] 390 / 1e-137 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027467 [exp] 498 / 1e-180 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 498 / 2e-180 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10014978 [exp] 496 / 7e-180 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023515 [exp] 443 / 1e-158 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10023184 [exp] 441 / 9e-158 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10019934 [exp] 437 / 2e-156 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10040399 [exp] 431 / 7e-154 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10028273 [exp] 384 / 2e-135 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10041397 [exp] 369 / 1e-129 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10035483 [exp] 362 / 1e-126 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.009G136600.1 pacid=42772862 polypeptide=Potri.009G136600.1.p locus=Potri.009G136600 ID=Potri.009G136600.1.v4.1 annot-version=v4.1 ATGTCAAAGGACGTGATTGAGGAAGGGCAAACTCATACGAAAGATTATGTTGATCCACCTCCAGCACCACTTTTTGATGTGGGTGAACTCAAGCTCTGGT CTTTCTTTAGAGCTCTCATAGCTGAGTTCATTGCTACACTTCTCTTCCTTTATGTCACTGTGGCTACTGTTATTGGCCACAAGAAAAACCAGGACGCTTG TGGTGGAGTTGGGTTGCTTGGTATTGCATGGGCTTTTGGTGGCATGATTTTTATCCTTGTTTACTGCACCGCTGGTATCTCTGGTGGACATATTAACCCA GCGGTCACTTTTGGCCTGTTACTGGCTAGGAAAGTGTCCCTAATCAGGGCTGTGGGCTACATGGTGGCTCAATGCTTGGGCGCAGTCTGTGGTGTTGGCT TGGTCAAGGCCTTCATGAAGCCATACTACAACTCTCTTGGTGGTGGTGCTAACATGGTGGCTCCCGGGTACAGCACAGGCACAGCTGTGGGTGCTGAGAT CATTGGCACTTTTGTGCTTGTTTACACTGTCTTCTCTGCAACTGACCCCAAGAGAAGTGCACGTGACTCTCACATCCCTGTTTTGGCTCCACTTCCAATT GGGTTTGCTGTGTTCATGGTCCACCTGGCCACAATCCCTATTACCGGTACTGGCATCAACCCTGCTAGGAGCTTTGGTGCTGCTGTCATCATCAACGATA AGAAAGCCTGGGATGATCATTGGATTTTCTGGGTTGGGCCATTTGTTGGAGCATTAGCAGCAGCTGCATACCACCAGTACATTCTGAGAGCTGGAGCCAT TAAGGCTTTGGGATCTTTCCGTAGCCACCCCACAAATTAA
AA sequence Show only first row Show all	>Potri.009G136600.1 pacid=42772862 polypeptide=Potri.009G136600.1.p locus=Potri.009G136600 ID=Potri.009G136600.1.v4.1 annot-version=v4.1 MSKDVIEEGQTHTKDYVDPPPAPLFDVGELKLWSFFRALIAEFIATLLFLYVTVATVIGHKKNQDACGGVGLLGIAWAFGGMIFILVYCTAGISGGHINP AVTFGLLLARKVSLIRAVGYMVAQCLGAVCGVGLVKAFMKPYYNSLGGGANMVAPGYSTGTAVGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPI GFAVFMVHLATIPITGTGINPARSFGAAVIINDKKAWDDHWIFWVGPFVGALAAAAYHQYILRAGAIKALGSFRSHPTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G136600 [exp]	0	1
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Potri.007G138800 [exp]	3.74	0.7764
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Potri.016G100100 [exp]	4.58	0.7735
AT4G18372			Small nuclear ribonucleoprotei...		Potri.015G138100 [exp]	5.65	0.7522
AT1G17350			NADH:ubiquinone oxidoreductase...		Potri.010G076600 [exp]	5.65	0.7805
AT5G06610			Protein of unknown function (D...		Potri.016G062400 [exp]	15.49	0.7328
AT4G39730			Lipase/lipooxygenase, PLAT/LH2...		Potri.007G091100 [exp]	18.00	0.7344
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108300 [exp]	26.72	0.7415
AT3G50150			Plant protein of unknown funct...		Potri.016G039200 [exp]	38.76	0.7498
AT1G68430			unknown protein		Potri.008G123800 [exp]	44.42	0.6930
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.013G008600 [exp]	47.66	0.7381

Compare expression of checked genes

Potri.009G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.