Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 396 / 1e-135 Protein of unknown function (DUF1624) AT5G27730 337 / 3e-112 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176400 [exp] 738 / 0 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 420 / 7e-145 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 401 / 2e-137 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 369 / 2e-124 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 342 / 1e-113 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 332 / 3e-110 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 306 / 5e-100 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027468 [exp] 520 / 0 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10039223 [exp] 490 / 2e-173 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10019798 [exp] 479 / 3e-169 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10010030 [exp] 400 / 1e-136 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10014112 [exp] 349 / 2e-117 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10020653 [exp] 338 / 2e-112 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 313 / 2e-102 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 307 / 4e-100 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10000090 [exp] 258 / 1e-84 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624) Lus10036333 [exp] 254 / 8e-82 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [poplar] [flax] Acyl_transf_3 PF07786 [poplar] [flax] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Potri.009G136700.1 pacid=42772675 polypeptide=Potri.009G136700.1.p locus=Potri.009G136700 ID=Potri.009G136700.1.v4.1 annot-version=v4.1 ATGGCAGACTTATTACACAAGCCATTGCTAGACATTGAAGAACAACTACATACCAGTAAGAAACCCCCACGTGCTGCCTCTCTCGATGTATTTCGTGGTC TCTGCGTCTTTCTAATGATGCTAGTTGATTATGGTGGGGCGATTATTCCCATTATTGCTCATTCTCCTTGGAATGGACTTCACTTGGCAGATTCTGTGAT GCCCTTCTTTCTTTTTATTGCTGGAGTTTCTCTTGCACTTGTTTACAAGAAAGTACCAAACAGAATCGAAGCCACATGGAAGGCAGTGCTAAAGGCAATA AAACTATTTTTGCTAGGTGTGGTTATTCAAGGTGGCTACTTTCATGGAATAAATTCCTTGACGTATGGTGTTGACATGAAAAGAATACGCTGGCTTGGAA TTTTGCAGAAAATATCTGTTGGATACATAGTTGCTGCTTTATGTGAGATTTGGCTTTCATGTCGAACACGGAGAGGAGTAAGCTTTCTCAAGAGTTATTA CTGGCATTGGTGTGTGGCATTTTCACTATCTGCAATATACCTGGGGTTATTGTATGGTTTATATGTTCCAGATTGGCAATTTGAAATGTCCAATGCAACT TCTTCTGTGTTTCCGACAAATCACAGCTACGTTTACATGGTAAAATGTTCTCTAAGAGGCGATCTTGGACCTGCTTGTAATTCAGCTGGAATGATTGATC GCTATATACTTGGCATTGATCACCTATATAAAAAACCTGTTTACAGAAACCTGAAGGAGTGCAATATGTCCACCGATGGCCAAGTTCCTGACAATTCAGC TTCCTGGTGTCATGCTCCTTTTGATCCTGAGGGTGTTTTAAGCTCCTTAACAGCTGCAGTGACCTGCATAATTGGGCTTCAATATGGACATCTTCTTGCT CACTTACAGGACCACAAGGGACGCATGGAGAACTGGACCCTATTCTCATTTTCACTTCTTGTAGTTGGGTTGCTCCTTGTTGTTATAGGCGATCCTGTGA ACAAATCTTTATACACTTTTAGTTATATGCTGATCACTTCCGCTTCAGCAGGAATCACATATTCTGCTTTATACTTGTTGGTAGATGTATATGATTACAG ATGCTTGACATTTGTATTGGAGTGGATGGGAAAGCATTCTTTGAGTATTTTCGTTCTCGTATCTTCTAACTTAGCTGTTATTACAATACAAGGATTCTGC TGGGCAGCTCCTGAAAATAACATGATTCACTGGATTGTTAGTCGGTTCGTGCGCAGATGA
AA sequence Show only first row Show all	>Potri.009G136700.1 pacid=42772675 polypeptide=Potri.009G136700.1.p locus=Potri.009G136700 ID=Potri.009G136700.1.v4.1 annot-version=v4.1 MADLLHKPLLDIEEQLHTSKKPPRAASLDVFRGLCVFLMMLVDYGGAIIPIIAHSPWNGLHLADSVMPFFLFIAGVSLALVYKKVPNRIEATWKAVLKAI KLFLLGVVIQGGYFHGINSLTYGVDMKRIRWLGILQKISVGYIVAALCEIWLSCRTRRGVSFLKSYYWHWCVAFSLSAIYLGLLYGLYVPDWQFEMSNAT SSVFPTNHSYVYMVKCSLRGDLGPACNSAGMIDRYILGIDHLYKKPVYRNLKECNMSTDGQVPDNSASWCHAPFDPEGVLSSLTAAVTCIIGLQYGHLLA HLQDHKGRMENWTLFSFSLLVVGLLLVVIGDPVNKSLYTFSYMLITSASAGITYSALYLLVDVYDYRCLTFVLEWMGKHSLSIFVLVSSNLAVITIQGFC WAAPENNMIHWIVSRFVRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47900			Protein of unknown function (D...		Potri.009G136700 [exp]	0	1
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	1.73	0.8404
					Potri.015G114501 [exp]	3.16	0.8048
AT4G20150			unknown protein		Potri.003G156301 [exp]	3.87	0.8284
AT3G27520			unknown protein		Potri.001G343200 [exp]	4.24	0.7866
AT1G12650			unknown protein		Potri.001G110000 [exp]	5.47	0.7833
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	5.47	0.8000
AT1G55790			Domain of unknown function (DU...		Potri.006G002700 [exp]	6.63	0.8176
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.012G087000 [exp]	6.63	0.8292
AT5G49320			Protein of unknown function (D...		Potri.010G140400 [exp]	7.00	0.7936
AT5G63690			Nucleic acid-binding, OB-fold-...		Potri.014G083500 [exp]	7.21	0.7795

Compare expression of checked genes

Potri.009G136700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.