Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20200 676 / 0 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) AT1G75990 669 / 0 PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176600 [exp] 766 / 0 AT1G20200 680 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017700 [exp] 503 / 4e-176 AT1G20200 554 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017800 [exp] 414 / 3e-141 AT1G75990 475 / 5e-165 PAM domain (PCI/PINT associated module) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034469 [exp] 721 / 0 AT1G20200 798 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10027832 [exp] 693 / 0 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10005061 [exp] 692 / 0 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10025072 [exp] 299 / 5e-97 AT1G75990 338 / 3e-112 PAM domain (PCI/PINT associated module) protein (.1) Lus10022337 [exp] 58 / 7e-09 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10041586 [exp] 58 / 9e-09 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain CL0123 [poplar] [flax] PF08375 [poplar] [flax] Rpn3_C Proteasome regulatory subunit C-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G136900.1 pacid=42772869 polypeptide=Potri.009G136900.1.p locus=Potri.009G136900 ID=Potri.009G136900.1.v4.1 annot-version=v4.1 ATGACTCAAGATGTTGAGATGAAAGAGCAGCATCAACCTTCCAATTCCACCACCTCCTCTCCATCCACACTCCACCATTTGAAGGAGATTGCATCGTTAA TTGAGACTGGAGCGTATGCGAAGGAAACGAGGAGGATTCAGAGAGCTGTGAGACTGACTAATACTTTAAGGAGAAAGTTGAAAGCTTCTGTGCTTTATGC TTTTCTTAATTTTGCTCTTTCGGCGGGATCCGAGTCGTTTAATCGTTTAATCTCTTATCTTCCTAAGGAAGATGAGTATGAAATGGAGGTTGATACTGCG ACATCTGTGACTCAAGCACCTGCAAAACATCCCTTGCCAGAGCTGGAGATATATTGCTACTTGTTGGTGCTGATTTTTCTGATTGATCAGAAGAAACACA TTGAGGCTAAAGCTTGCTCATCGGCAAGCATTGCTCGCCTGAAGAATCTGAATAGGAGGACTGTTGATGTTCTGGCATCAAGGCTGTATTCCTACTACTC ACTTAGCTATGAACTCACTGGTGATCTTGCTGAAATCAGAGGTAGCCTCCTTGCTCTTCATCGGATTGCAACACTGCGCCATGATGAGCTGGGCCAGGAA ACACTTCTCAACCTGCTACTCCGCAATTACCTCCATTACAATTTATATGATCAGGCAGAGAAGCTGAGGTCGAAGGCCCCTCGATTTGAGGCTCACTCAA ATCAGCAGTTTTGTCGGTATCTCTTTTACTTGGGAAAGATTAGGACAATTCAGTTGGAGTATACTGATGCAAAAGAATCTCTCCTTCAAGCTGCACGTAA AGCCCCTGCTGCAGCCCTTGCTTTTCGAGTTCAATGCAACAAGTGGGCAGTTATTGTCAGATTGCTGCTAGGAGAAATCCCTGAGAGGACTGTTTTTATG CAAAAAGGCATGGAGAGTGCTTTGAGGCCATACTTTGAGCTCACAAATGCTGTGCGAATAGGGGACTTGGAGCTCTTTAAGTCCGTTGCTGAGAAGTTCT CATCTACTTTCAGCAAAGACAGGACCCACAACTTAATTGTTAGACTGCGGCACAATGTCATAAGGACTGGACTTCGCAACATCAGTATCTCTTATTCTCG TATTTCACTGGCTGATGTAGCCAAGAAGCTGAGGTTGGACTCTGCAAACCCTGTTGCTGATGCTGAGAGTATTGTGGCTAAGGCAATACGAGATGGTGCT ATTGATGCTACTTTAGATCGTGCAAATGGGTGGATGGTATCCAAGGAAACAGGGGACATATACTCCACAAATGAGCCTCAGCTGGCATTTAACTCTAGGA TTGCCTTCTGCCTCAACATGCATAATGAGGCAGTACGTGCCCTTAGGTTTCCACCTAATTCCCACAAGGAGAAAGAAAGTGCTGAGAAAAGGAGGGAGAG ACAACAGCAGGAGCAAGAGCTTGCAAAGCACATAGCTGAGGAGGATGATGATGAGTTTTGA
AA sequence Show only first row Show all	>Potri.009G136900.1 pacid=42772869 polypeptide=Potri.009G136900.1.p locus=Potri.009G136900 ID=Potri.009G136900.1.v4.1 annot-version=v4.1 MTQDVEMKEQHQPSNSTTSSPSTLHHLKEIASLIETGAYAKETRRIQRAVRLTNTLRRKLKASVLYAFLNFALSAGSESFNRLISYLPKEDEYEMEVDTA TSVTQAPAKHPLPELEIYCYLLVLIFLIDQKKHIEAKACSSASIARLKNLNRRTVDVLASRLYSYYSLSYELTGDLAEIRGSLLALHRIATLRHDELGQE TLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPAAALAFRVQCNKWAVIVRLLLGEIPERTVFM QKGMESALRPYFELTNAVRIGDLELFKSVAEKFSSTFSKDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVAKAIRDGA IDATLDRANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.009G136900 [exp]	0	1
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	1.41	0.8621
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.001G224100 [exp]	4.00	0.8496	Pt-PAG1.1
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.013G114300 [exp]	9.38	0.8322
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	9.38	0.7795	ATS9.2
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	9.79	0.7963
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	10.39	0.8523	PtrAtpB_1,ATP.1
AT2G31490			unknown protein		Potri.006G077400 [exp]	11.18	0.8066
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	12.00	0.7863	PP2.5
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	12.16	0.7838
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.019G057300 [exp]	12.24	0.8435	Pt-MSD1.1

Compare expression of checked genes

Potri.009G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.