Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34360 182 / 7e-51 translation initiation factor 3 (IF-3) family protein (.1) AT4G30690 45 / 7e-05 Translation initiation factor 3 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G182000 [exp] 48 / 9e-06 AT2G24060 251 / 3e-83 Translation initiation factor 3 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032318 [exp] 171 / 1e-47 AT1G34360 142 / 4e-37 translation initiation factor 3 (IF-3) family protein (.1) Lus10024699 [exp] 155 / 5e-42 AT1G34360 122 / 3e-30 translation initiation factor 3 (IF-3) family protein (.1) Lus10036595 [exp] 42 / 0.0007 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G137000.1 pacid=42771530 polypeptide=Potri.009G137000.1.p locus=Potri.009G137000 ID=Potri.009G137000.1.v4.1 annot-version=v4.1 ATGGCTTTTTGGATTAGAACTAATCAGTCAAAGCTCATTTTTTTGTCAAAACAGTTGAAGATATACTACCTTCAAATCCCATATGATTCTTCACTTAAAT ACACTGCTACTAGCTCAAGATCACGTGTTTTAGAGAATCCAGTTTGTGATTTTATTAAAAAGCACTCTGAATTTTGCAACAATGTCAGGTTTTTTGCTGC CCCAGTTCAGGCCAAAGTGAACAAGGAAGAGAAGACTTTGAGTGGGCCAAGATTAAATGAGAAAATCACTGCGCCGGTTGTTAGGCTTGTGGGTGATGAA GGGCATATTGTTCTCTCATTGCGTGAAGCACTAGAACGAGCAAAAAGACTTGAACTTGATTTAGTTGAGGTTCAAAGAAATGCCAATCCACCTGTCTGTA AACTCTTGAACTTTAACCGAGAGAAGTACAAAAAAGAACTGAAGGAAAAGGAACGTTCTAAAAGCAAGGCAGGGGAAACTCTGCGCAAAGGAGATCACAA GGAAGTTCGATTTGCTGCAAAAACTGAACAAAGAGACTTGGAAATGAAAGCTGATATGGCCAAAAGACTGATGGAACGTGGCTATAGGGTGAAGTGTTTG GTAATTGGTAGTCGAAAAAAGCGTTCAATGCCAAAAGTTCCTAGAGATGAGGATCCAGAGACGGACTTTGATTATGAAGAGTTTGAGAGAAAGAAAGAAG AGGAGGAGTTGCTAGCACTGTTGTCTCGCTTCATTTCTTTGATTGAAGATGTGTCTATTGTGGATAGTGGACCAAGGGCAGGAAGAAAAATGGCATATGC GATAGTTAGGCATGTCAAGTTCGGCTCATCAAAGAAAGGTGGTGGTAAAAAGGACGAGTTAGCCAATGCGCGGCCAACAGACAGTCGATCTGCTCCTCCC AAGAGCCCTGCGATGTCTAAGGAAGAGCATGCAGAATTTTACATGGAATCTGAAGATGAGTCAGCCGATGATTTTGACAAGGTGTTTGATTTCAGCAATG ATGCAAAGAGTCCTAGTATAAATCATTCAGAGGGAAGTAATTCTGTTACAGAACCAGCTACCTCCAGTGTAGAGTTTAATGTTCCGAAGTTCTCTCATCC AAGATCAGCACATGATGTAAGGAATGCAAGACTTCCTTCGGCCCTACCAGAGCCTTCCCCGGGGAAGGAAAATAGGTATAGAAGAAGTGAACCGGGGAAT CAGTTCCTACAAACGTCAATGGATAATAAAGGCCCAGGTAAGCAGGACTCATTCAAGTTTGAACCACAGTTCTCGAACCAAAGAAGGCAACCACAACCAC AGATGAATGCCACTCCATCAACGGGAGAAAGGAAGCAGGTTAGCCCTGATTTTTCTGCTTCTAGAAACTCAAAGCCTCCTCATGAAACACCCAAGCAAGT TGCTTCTTCTCCAGAGACTGCAAAACCTGCATCTAGCTATGGAATATTTAGCTCTGCAAAAGCTGTTATTCCCGGGAAACAAGGCTCTGTAGCAGACGAT TCAGCTGGAAATTCTAGCCTCCCAGGTTCAAAATCAGATGGTGGCGTTGATCAGGGTGGACAGAAGGGATTTGGGATTTTCAGTCGAGGCAGGCCAAATT GA
AA sequence Show only first row Show all	>Potri.009G137000.1 pacid=42771530 polypeptide=Potri.009G137000.1.p locus=Potri.009G137000 ID=Potri.009G137000.1.v4.1 annot-version=v4.1 MAFWIRTNQSKLIFLSKQLKIYYLQIPYDSSLKYTATSSRSRVLENPVCDFIKKHSEFCNNVRFFAAPVQAKVNKEEKTLSGPRLNEKITAPVVRLVGDE GHIVLSLREALERAKRLELDLVEVQRNANPPVCKLLNFNREKYKKELKEKERSKSKAGETLRKGDHKEVRFAAKTEQRDLEMKADMAKRLMERGYRVKCL VIGSRKKRSMPKVPRDEDPETDFDYEEFERKKEEEELLALLSRFISLIEDVSIVDSGPRAGRKMAYAIVRHVKFGSSKKGGGKKDELANARPTDSRSAPP KSPAMSKEEHAEFYMESEDESADDFDKVFDFSNDAKSPSINHSEGSNSVTEPATSSVEFNVPKFSHPRSAHDVRNARLPSALPEPSPGKENRYRRSEPGN QFLQTSMDNKGPGKQDSFKFEPQFSNQRRQPQPQMNATPSTGERKQVSPDFSASRNSKPPHETPKQVASSPETAKPASSYGIFSSAKAVIPGKQGSVADD SAGNSSLPGSKSDGGVDQGGQKGFGIFSRGRPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34360			translation initiation factor ...		Potri.009G137000 [exp]	0	1
AT2G18850			SET domain-containing protein ...		Potri.006G168900 [exp]	3.46	0.7043
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.002G032100 [exp]	4.47	0.7207	Pt-MPK1.2
					Potri.006G031500 [exp]	6.48	0.6412
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Potri.006G221700 [exp]	9.53	0.7294
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Potri.005G235900 [exp]	13.96	0.6617
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	18.70	0.6668
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.002G123300 [exp]	20.97	0.6064
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	26.07	0.6670	B5.2
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.010G134400 [exp]	29.24	0.6774
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.010G125600 [exp]	36.66	0.6745

Compare expression of checked genes

Potri.009G137000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.