Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51290 228 / 5e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G39790 218 / 3e-61 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 211 / 2e-58 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 213 / 3e-58 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 207 / 6e-57 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 207 / 2e-56 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 195 / 2e-52 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 193 / 5e-52 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 184 / 8e-51 unknown protein AT5G25590 186 / 2e-49 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177200 [exp] 1039 / 0 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 607 / 0 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 223 / 2e-62 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G112300 [exp] 219 / 8e-62 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G077700 [exp] 219 / 2e-61 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G056700 [exp] 215 / 1e-60 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G179100 [exp] 216 / 2e-59 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 211 / 4e-58 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 204 / 5e-56 AT1G52320 626 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025077 [exp] 678 / 0 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 635 / 0 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 219 / 2e-61 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 218 / 9e-61 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 216 / 1e-60 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 210 / 4e-60 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10029683 [exp] 209 / 3e-57 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 205 / 1e-56 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042722 [exp] 205 / 1e-56 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 199 / 5e-54 AT1G52320 652 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Potri.009G137500.1 pacid=42772893 polypeptide=Potri.009G137500.1.p locus=Potri.009G137500 ID=Potri.009G137500.1.v4.1 annot-version=v4.1 ATGGGATGTGTTGCTTCCAAGCTAGAAGAAGAAGAGGTTGTATCTATCTGTCGAGAGAGGAAGCGCCAGTTGAACCTTGCTGTAGAGAGAAGACATGCAC TAGCAGAGGCGCATTGTAGATATTATCAATCTCTCTATGCAGTAGCAGCAGGTATAAAGCTTTTTGTAGCTAGACATTCTTCCCCAGCTTCACCATTTCT CATTTCTTTCCCTCCTCCTTGCCCATCTCCACCACCAAGTGAAGAAAAAAATGCGATAAGAAACCCAATGTTTCTTCAACAAGGACCATCCGAGTCAACA ACACATGAAGAAGCCATTGCTTGTGAGTCTTGTGGTTCTTCAACAATATCTTCTTCAGACTGCAGTGATCACGAGGAAGAGGGTAATAAAGAAGACGTCA TGAAGAGAGAGGAACATGCACAACAAAGTTATGGGTACTATTATATGCAAATGCCACCACCACCACAGTCACCTCAGAGGGATTTTGGGTGGGATTTCTT TAACCCTTTTAATACTAGCACGAGGCCAGAGATTATAAGTGGTTACAGGAGAAGTTCTGATGATGATTTGAGGGCTGTGAGGGAAGAGGAAGGGATTCCT GACCTAGAAGGAGATAGAGAAGAGGAAGAGAAAAATGTGATTGTTGTTGAAGAGAAAGGGAAAGGAGATCTTGGGGACAGTGGAGGTAATGTGGTCAAGG TAGTTGATGGAGGTGGTGATGGGAGCCAAGGTGAGCAGAAGGGACTTACAGTCATTGATACACCAGAGAGAGGGAGGGAGTTATTGGATGCTTTGAAGGA TATTGAGGACCATTTCATTAGGGCTTATGATTCTGGCAAAGATGTGTCAAGGATGCTTGAGGCTAATAAAGTTTTCTTGCAGTCTGGCTTGGAGGAAATT AAAGAGAACTCAACAAAACTAATCCAAGCTATTACATGGCATCGGTCCACTTCATCAAAGCCATCATCATGTAAGAGCCTTGTAGCATCCAGTTCGAAAG GCTCTTCTACTTGGACAGAATATAAAAATGATCTCTTTGATGATTATGGAGGAATGGATTCAGGAAGCCATTCACTAACACTTGGAAGGTTGTATGCTTG GGAAAAGAAGCTCTATGAAGAGGTCAAGGCAGGAGACAGCACAAGAAAAATATATGAAAAGAAGTGTTCACGACTGAGAAACCAGGATGTCAGGGGAGAT GATGAACTTACCATGGACAAGACCAGAGCTGCAGTAAAAGATTTATATGCTAGGATCTTGGTTGCAATTCGAAGTGCTGAATCAATTTCTAAGAGAATCG AGAAATTAAGAGATGAAGAACTGCAGCCTCAAATTGTAGAACTGTTAAAAGGCCTAACACACACCTGGAAGATTATGTTGGAATCCCATGAAACCCAGAA CAAGATTCTTTTCGAAGTAAAATCTTTTGCCAGCCCCACACATGAAAAATTCTGCAATGACTTGCACCGGCTGGCGACACTTCAGCTCAAGGCTGAGCTT CTGAATTGGCGTGCATGCTTTATAGAGTATGTTGCAGCACAAAAGGCATATGTTGGAGCTCTTCATGGTTGGTTAAGCATGTTCATAATACCTGAAAATG AGTTCTGCTCCAGGGTCAGGAGTTCAGCAGCGCCTTATCGAGCAGTTGGTCCCCCGTTACTTGGGACTTGCCATGATTGGTTGTCTTCTATGGATAAGTT ACCAGACAAGGCAGTATCCTTTGCAATTAAAAGCTTCTTGAAGGATATGAAGGCTTTGTGGGCTCAGCAAGGGGAGGAACAGCTACAGAAGAGGAAAGTT GACAGTCTAGCAAGAGAACTCGACAGAAGAACCACGTCATTCCAGAAGGTAGAGACCAGGTTTCTTGAATCTGAACTTATAGAATATAAACCTGAGCCAG ATGCAGAAAACCGGCGCGAACACTTGACAGAGAAGAAAGATCAGTTGGACATGTTTAGGAAGAAGCTGGATGTAGAGAAGGAAAAACACCACAACTACGT GAAAGAAACACAAAGGATCACACTAAGTGGGTTTCAGATAGGATTTTCGAGAGTTTTTGAGTCCTTAACTGAATTCTCTAAGGCTTCTATGAAGATGTAC AATGATCTTGCAAATCATAGCGAGAACACTGCTGGTAAAGTGGAGAAACAATCTTTCCTAGAAGGCTCCCCTGTCGAAGAAAATGGCAGCGGGTGA
AA sequence Show only first row Show all	>Potri.009G137500.1 pacid=42772893 polypeptide=Potri.009G137500.1.p locus=Potri.009G137500 ID=Potri.009G137500.1.v4.1 annot-version=v4.1 MGCVASKLEEEEVVSICRERKRQLNLAVERRHALAEAHCRYYQSLYAVAAGIKLFVARHSSPASPFLISFPPPCPSPPPSEEKNAIRNPMFLQQGPSEST THEEAIACESCGSSTISSSDCSDHEEEGNKEDVMKREEHAQQSYGYYYMQMPPPPQSPQRDFGWDFFNPFNTSTRPEIISGYRRSSDDDLRAVREEEGIP DLEGDREEEEKNVIVVEEKGKGDLGDSGGNVVKVVDGGGDGSQGEQKGLTVIDTPERGRELLDALKDIEDHFIRAYDSGKDVSRMLEANKVFLQSGLEEI KENSTKLIQAITWHRSTSSKPSSCKSLVASSSKGSSTWTEYKNDLFDDYGGMDSGSHSLTLGRLYAWEKKLYEEVKAGDSTRKIYEKKCSRLRNQDVRGD DELTMDKTRAAVKDLYARILVAIRSAESISKRIEKLRDEELQPQIVELLKGLTHTWKIMLESHETQNKILFEVKSFASPTHEKFCNDLHRLATLQLKAEL LNWRACFIEYVAAQKAYVGALHGWLSMFIIPENEFCSRVRSSAAPYRAVGPPLLGTCHDWLSSMDKLPDKAVSFAIKSFLKDMKALWAQQGEEQLQKRKV DSLARELDRRTTSFQKVETRFLESELIEYKPEPDAENRREHLTEKKDQLDMFRKKLDVEKEKHHNYVKETQRITLSGFQIGFSRVFESLTEFSKASMKMY NDLANHSENTAGKVEKQSFLEGSPVEENGSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51290			Protein of unknown function (D...		Potri.009G137500 [exp]	0	1
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G250900 [exp]	1.73	0.9022
AT4G23900			Nucleoside diphosphate kinase ...		Potri.003G140600 [exp]	8.60	0.8443	Pt-NDK4.1
AT1G50110			D-aminoacid aminotransferase-l...		Potri.009G082600 [exp]	9.64	0.8535
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.001G253700 [exp]	9.79	0.8836
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	10.95	0.8859
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.016G043100 [exp]	14.66	0.8386
AT5G26110			Protein kinase superfamily pro...		Potri.002G049900 [exp]	17.23	0.8725
AT1G64355			unknown protein		Potri.003G138500 [exp]	17.74	0.8907
AT3G23760			unknown protein		Potri.018G096056 [exp]	17.94	0.8927
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	20.19	0.8646

Compare expression of checked genes

Potri.009G137500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.