Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1) AT3G51140 45 / 2e-05 Protein of unknown function (DUF3353) (.1) AT5G23040 42 / 0.0003 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT1G08640 41 / 0.0007 CJD1 Chloroplast J-like domain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177300 [exp] 484 / 9e-175 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) Potri.013G046200 [exp] 50 / 6e-07 AT1G08640 358 / 5e-125 Chloroplast J-like domain 1 (.1) Potri.019G018300 [exp] 45 / 4e-05 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1) Potri.007G015600 [exp] 43 / 0.0001 AT3G51140 331 / 1e-114 Protein of unknown function (DUF3353) (.1) Potri.012G057700 [exp] 42 / 0.0002 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024004 [exp] 331 / 4e-114 AT2G20920 332 / 8e-115 Protein of unknown function (DUF3353) (.1) Lus10005055 [exp] 318 / 3e-109 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10005056 [exp] 318 / 3e-109 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10025079 [exp] 315 / 4e-108 AT2G20920 333 / 5e-115 Protein of unknown function (DUF3353) (.1) Lus10027826 [exp] 309 / 8e-106 AT2G20920 309 / 7e-106 Protein of unknown function (DUF3353) (.1) Lus10038965 [exp] 49 / 2e-06 AT5G23040 361 / 3e-127 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10041816 [exp] 44 / 7e-05 AT3G51140 328 / 3e-112 Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 43 / 8e-05 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10000868 [exp] 43 / 0.0001 AT5G23040 359 / 3e-126 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10027257 [exp] 43 / 0.0002 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [poplar] [flax] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Potri.009G137600.1 pacid=42772634 polypeptide=Potri.009G137600.1.p locus=Potri.009G137600 ID=Potri.009G137600.1.v4.1 annot-version=v4.1 ATGGCTGCAACTCTCTCGGTCCGGTCCAACCGTCTCTCTCCATCCGGTTCACCTTTCTCACGACCACCGGTTCACAATCCCTCAAACTTAAATCAAATAA AATCATCATTAAAAAAGGATCCGTATTTTTGGAGGGGAGTAATTGTGCAACACAGGCGTAATTTAGTGAGAGCAGGCTCAAGAGCCGATGATTCTTCGGC GCCGTTTGAGATGTCAGTGGAGAGCGCACTCAAGCTTCTCGGTGTCCCAGACGGCGCGTCGTTCGATGAAATACTTCGCGCCAAAAAATTAATTGTTGCT ACTTGTAAAGATGACCAGGAAGCTATTGCGCAGGTTGAAACTGCGTATGATATGCTGCTTATGCGGAGCTTGACTCAGCGCCGAGCAGGAAAAGTTGCAA GTAGTAACATCCGTTATGCTGATGTTAAACCTGTAAATGGCCCTGGGATGGGATCAATGCCACAATGGCTGCAGACTACAATCAAGAAGACCCCTGTTTC CGTGGAAACGCCATCAACTGGAGAGTTAAGCTTACAAGCAGGAGTATATGGAGCTTTGATGGTTTTAACTTATGTTAATGGCACTTCCACACCTTCTGTG GCACCTTATGCTGGGGCTGATGTTCCTGGGCTGTTATTAGCTACAAGTTTTGGTGCTTCCTTATACTTCATGACCAAAAAGAATGTGAAATTAGGGAAAG CCACTGTAATAACCATAGGGGGGCTTGCGGCTGGTGCAGTGGTGGGTTCAGCAGTTGAGAATTTGTTGCAGGTGGACGTGGTCCCACTTCTTGGCTTACA CTCCCCAGCAGCTGTAGTTAGCGAATTCATACTTTTCTCGCAATTCTTGGTCTCCTTGTACCTTAGGTAG
AA sequence Show only first row Show all	>Potri.009G137600.1 pacid=42772634 polypeptide=Potri.009G137600.1.p locus=Potri.009G137600 ID=Potri.009G137600.1.v4.1 annot-version=v4.1 MAATLSVRSNRLSPSGSPFSRPPVHNPSNLNQIKSSLKKDPYFWRGVIVQHRRNLVRAGSRADDSSAPFEMSVESALKLLGVPDGASFDEILRAKKLIVA TCKDDQEAIAQVETAYDMLLMRSLTQRRAGKVASSNIRYADVKPVNGPGMGSMPQWLQTTIKKTPVSVETPSTGELSLQAGVYGALMVLTYVNGTSTPSV APYAGADVPGLLLATSFGASLYFMTKKNVKLGKATVITIGGLAAGAVVGSAVENLLQVDVVPLLGLHSPAAVVSEFILFSQFLVSLYLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20920			Protein of unknown function (D...		Potri.009G137600 [exp]	0	1
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	1.00	0.9893	APG2.1
AT2G41120			unknown protein		Potri.006G025200 [exp]	2.00	0.9819
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G098800 [exp]	3.00	0.9708
AT5G09995			unknown protein		Potri.010G003700 [exp]	3.46	0.9778
AT1G27385			unknown protein		Potri.001G056500 [exp]	5.00	0.9739
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.016G001400 [exp]	5.19	0.9597
AT5G05200			Protein kinase superfamily pro...		Potri.019G061300 [exp]	7.48	0.9656
AT1G33780			Protein of unknown function (D...		Potri.013G100000 [exp]	7.74	0.9594
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Potri.014G138500 [exp]	8.00	0.9630
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	8.36	0.9710	Pt-RFC3.1

Compare expression of checked genes

Potri.009G137600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.