Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23590 255 / 1e-84 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT1G59980 66 / 7e-12 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G76700 63 / 4e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 62 / 1e-10 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G48030 60 / 6e-10 GFA2 gametophytic factor 2 (.1) AT4G39150 59 / 7e-10 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT1G16680 59 / 7e-10 Chaperone DnaJ-domain superfamily protein (.1) AT2G21510 57 / 5e-09 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G79030 56 / 9e-09 Chaperone DnaJ-domain superfamily protein (.1) AT1G77020 53 / 8e-08 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158300 [exp] 62 / 7e-11 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G260400 [exp] 62 / 1e-10 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 61 / 2e-10 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G000300 [exp] 61 / 2e-10 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.009G119800 [exp] 61 / 3e-10 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G185800 [exp] 56 / 8e-09 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.011G142000 [exp] 56 / 9e-09 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G271300 [exp] 55 / 2e-08 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 55 / 2e-08 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027828 [exp] 273 / 9e-91 AT5G23590 331 / 2e-113 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10005058 [exp] 276 / 5e-87 AT3G59040 623 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017472 [exp] 58 / 3e-09 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 57 / 3e-09 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10013198 [exp] 57 / 4e-09 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10041972 [exp] 56 / 7e-09 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 56 / 7e-09 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10035855 [exp] 56 / 8e-09 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10011934 [exp] 56 / 2e-08 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10036638 [exp] 56 / 2e-08 AT5G48030 516 / 0.0 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.009G138100.2 pacid=42771290 polypeptide=Potri.009G138100.2.p locus=Potri.009G138100 ID=Potri.009G138100.2.v4.1 annot-version=v4.1 ATGGATGTTGATCACTATAATGTGTTGGGGCTACCTTCTGGGGAGGAAGGGGCGAAGCTAACTGAAAAAGAAATAGCGAAAGCGTATAAACTGAAGGCTT TAGTGTTGCATCCGGATAAGAGGCCGGATGATCCAAACGCTCATGAAAATTTCCAGAAGCTGAAGTTGTCATACGAGGTTCTCAAGGATGAGAAAGCCCG TAAATTGTTTGATGATCTTCTTCGAGCTAAAAGAGAGCAGCGTGCCCGTCGGGGTCAGCAGGATGCCAAGAGGCGGAGGATGGTGTCTGATCTTGAAGAA CGGGAACGTGCTGCATTCGCTGTTGATCCTGCTGAAGTGGAAAAAAGGAGAGTAGAGAAGATTGACAAGGAGTTGAGAGCACAAGTGGATAAAATAAAAG CCATGTTTGCGAACAAAGGCGTGCCTGTGGTGAAGAAAGAGACGGTGGGAGTAAAGGAGAGTAGGATTGAGGAAGATGAGAAGAAGATACTTAATGTTAG ATGGGAAAAAGTGGATAGCGAGGGCTATAGTGCTGAGAGGCTGAGAGAGTTGTTTTCGAAGTTTGGTGAGGTTAAAGATGTTGTTATTAGAAGTAACAAG GAAAAGAAAAAAAGAGGCCAAGCTCTTGTTGAAATGGCAACTGAAGAAGCAGCTGTTGCTGCTCTGGGGAACGTGTATGGAAATCTGTCAAATCCTCTTC TAGTTTTACCTTATGGAAAAAAGGTCGCAGCAACAACGATTCCTACAAGGGAATCTGATGGCCTAAACATTTTTTCTGGGATTAACCATCAAGCTTATGA AGATAACATCTTAGAGAAGCTCCAAAAGGCTGCAGAAAACCAAAGGCAAAAGGCATGA
AA sequence Show only first row Show all	>Potri.009G138100.2 pacid=42771290 polypeptide=Potri.009G138100.2.p locus=Potri.009G138100 ID=Potri.009G138100.2.v4.1 annot-version=v4.1 MDVDHYNVLGLPSGEEGAKLTEKEIAKAYKLKALVLHPDKRPDDPNAHENFQKLKLSYEVLKDEKARKLFDDLLRAKREQRARRGQQDAKRRRMVSDLEE RERAAFAVDPAEVEKRRVEKIDKELRAQVDKIKAMFANKGVPVVKKETVGVKESRIEEDEKKILNVRWEKVDSEGYSAERLRELFSKFGEVKDVVIRSNK EKKKRGQALVEMATEEAAVAALGNVYGNLSNPLLVLPYGKKVAATTIPTRESDGLNIFSGINHQAYEDNILEKLQKAAENQRQKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23590			DNAJ heat shock N-terminal dom...		Potri.009G138100 [exp]	0	1
AT3G58090			Disease resistance-responsive ...		Potri.006G216000 [exp]	4.24	0.7658
AT3G13780			SMAD/FHA domain-containing pro...		Potri.001G196700 [exp]	6.32	0.7829
AT4G16530			Family of unknown function (DU...		Potri.001G123200 [exp]	6.92	0.7615
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Potri.009G094800 [exp]	18.54	0.7189
AT3G13340			Transducin/WD40 repeat-like su...		Potri.002G233700 [exp]	19.79	0.6732
AT4G38060			unknown protein		Potri.002G106300 [exp]	28.16	0.6623
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.006G189100 [exp]	30.28	0.7311	STA.1
AT4G26180			Mitochondrial substrate carrie...		Potri.006G153600 [exp]	32.21	0.7410
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	33.31	0.6912
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	36.63	0.7108

Compare expression of checked genes

Potri.009G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.